MAb 6H10 light chain (LC) is a 234-residue protein from Mus musculus. This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: A0A0U5BC76.
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The mean pLDDT of this model is 91.7 (very high overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 81% |
| 70 to 90 | Confident: backbone generally right | 10% |
| 50 to 70 | Low: treat with caution | 5% |
| Below 50 | Very low: often disordered regions | 4% |
What pLDDT means and how to read it
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 5IKC | X-ray | 2.06 Å | A/L=22-233 |
| 5VLP | X-ray | 2.9 Å | L=21-234 |
| 6U3I | X-ray | 2.9 Å | L=21-234 |
| 6U2F | X-ray | 2.94 Å | L=21-234 |
| 6VRH | EM | 3.3 Å | C=21-234 |
| 6VRL | EM | 3.8 Å | C=21-234 |
| 6VRK | EM | 4.1 Å | C=21-234 |
MolViewer loads the AlphaFold model straight from AlphaFold DB into your browser. Show it as a cartoon, color by pLDDT, measure distances and angles, and load a PDB structure next to it to compare.