Small molecules in 3D
988 molecules with 3D coordinates from PubChem. Open any of them to rotate the model, switch to space-filling view and measure bond lengths and angles. You can also type any compound name into the PubChem box in the viewer.
- Amino acids (36)
- Common drugs (351)
- Dyes and pigments (45)
- Fatty acids and lipids (33)
- Food, flavor and fragrance (70)
- Hormones (37)
- Natural products (72)
- Neurotransmitters (23)
- Nucleotides and nucleobases (39)
- School chemistry (127)
- Solvents (30)
- Stimulants (21)
- Sugars (35)
- Toxins and poisons (42)
- Vitamins (27)
Amino acids
- Alanine
- Arginine
- Asparagine
- Aspartic acid
- Beta-alanine
- Carnosine
- Citrulline
- Creatine
- Creatinine
- Cysteine
- Cystine
- Glutamic acid
- Glutamine
- Glutathione
- Glycine
- Histidine
- Homocysteine
- Hydroxyproline
- Isoleucine
- Kynurenine
- Leucine
- Lysine
- Methionine
- Ornithine
- Phenylalanine
- Proline
- Pyroglutamic acid
- Pyrrolysine
- Sarcosine
- Serine
- Taurine
- Theanine
- Threonine
- Tryptophan
- Tyrosine
- Valine
Common drugs
- Abacavir
- Abiraterone
- Acarbose
- Acetaminophen
- Acetazolamide
- Acyclovir
- Adapalene
- Agomelatine
- Albendazole
- Albuterol
- Alendronic acid
- Allopurinol
- Alprazolam
- Amantadine
- Amiodarone
- Amitriptyline
- Amlodipine
- Amoxicillin
- Ampicillin
- Anastrozole
- Apixaban
- Aripiprazole
- Aspirin
- Atenolol
- Atomoxetine
- Atorvastatin
- Azathioprine
- Aztreonam
- Baclofen
- Benazepril
- Benzocaine
- Benzoyl peroxide
- Betamethasone
- Bicalutamide
- Bisacodyl
- Bisoprolol
- Brimonidine
- Budesonide
- Bumetanide
- Bupivacaine
- Buprenorphine
- Bupropion
- Buspirone
- Canagliflozin
- Candesartan
- Capecitabine
- Captopril
- Carbamazepine
- Carbidopa
- Carfentanil
- Carvedilol
- Cefazolin
- Cefdinir
- Cefepime
- Cefixime
- Ceftriaxone
- Cefuroxime
- Celecoxib
- Cephalexin
- Cetirizine
- Chloramphenicol
- Chlordiazepoxide
- Chloroquine
- Chlorphenamine
- Chlorpromazine
- Chlorthalidone
- Cimetidine
- Cinnarizine
- Ciprofloxacin
- Citalopram
- Clavulanic acid
- Clindamycin
- Clomifene
- Clomipramine
- Clonazepam
- Clonidine
- Clopidogrel
- Clotrimazole
- Clozapine
- Codeine
- Colchicine
- Cyclobenzaprine
- Cyclophosphamide
- Cytarabine
- Dapagliflozin
- Dapsone
- Darunavir
- Desflurane
- Desloratadine
- Dexamethasone
- Dextromethorphan
- Diazepam
- Diclofenac
- Diethylstilbestrol
- Diltiazem
- Diphenhydramine
- Disulfiram
- Dolutegravir
- Domperidone
- Donepezil
- Doxazosin
- Doxepin
- Doxorubicin
- Doxycycline
- Doxylamine
- Drospirenone
- Duloxetine
- Dutasteride
- Efavirenz
- Empagliflozin
- Emtricitabine
- Enalapril
- Enzalutamide
- Erlotinib
- Escitalopram
- Esketamine
- Esomeprazole
- Ethambutol
- Ethinylestradiol
- Etoposide
- Ezetimibe
- Famotidine
- Favipiravir
- Febuxostat
- Fenofibrate
- Fentanyl
- Fexofenadine
- Finasteride
- Flucloxacillin
- Fluconazole
- Flunitrazepam
- Fluorouracil
- Fluoxetine
- Fluticasone propionate
- Fluvoxamine
- Formoterol
- Furosemide
- Gabapentin
- Galantamine
- Ganciclovir
- Gefitinib
- Gemcitabine
- Gemfibrozil
- Glimepiride
- Glipizide
- Glyburide
- Guaifenesin
- Guanfacine
- Haloperidol
- Halothane
- Heroin
- Hydralazine
- Hydrochlorothiazide
- Hydrocodone
- Hydromorphone
- Hydroxychloroquine
- Hydroxyurea
- Hydroxyzine
- Ibrutinib
- Ibuprofen
- Imatinib
- Imipenem
- Imipramine
- Indomethacin
- Ipratropium
- Irbesartan
- Isoflurane
- Isoniazid
- Isosorbide mononitrate
- Isotretinoin
- Itraconazole
- Ketamine
- Ketoconazole
- Ketoprofen
- Ketorolac
- Lamivudine
- Lamotrigine
- Lansoprazole
- Latanoprost
- Leflunomide
- Lenalidomide
- Letrozole
- Levetiracetam
- Levocetirizine
- Levodopa
- Levofloxacin
- Levonorgestrel
- Lidocaine
- Linagliptin
- Linezolid
- Lisinopril
- Loperamide
- Loratadine
- Lorazepam
- Losartan
- Lovastatin
- Lurasidone
- Mebendazole
- Meclizine
- Medroxyprogesterone acetate
- Mefloquine
- Meloxicam
- Memantine
- Mercaptopurine
- Meropenem
- Mesalamine
- Metamizole
- Metformin
- Methadone
- Methimazole
- Methotrexate
- Methylprednisolone
- Metoclopramide
- Metoprolol
- Metronidazole
- Miconazole
- Midazolam
- Mifepristone
- Minocycline
- Minoxidil
- Mirabegron
- Mirtazapine
- Misoprostol
- Molnupiravir
- Montelukast
- Morphine
- Moxifloxacin
- Mycophenolic acid
- N-Acetylcysteine
- Naloxone
- Naltrexone
- Naproxen
- Neostigmine
- Nevirapine
- Nifedipine
- Nirmatrelvir
- Nitrofurantoin
- Nitroglycerin
- Norethisterone
- Nortriptyline
- Ofloxacin
- Olanzapine
- Olaparib
- Olmesartan
- Omeprazole
- Ondansetron
- Oseltamivir
- Osimertinib
- Oxcarbazepine
- Oxybutynin
- Oxycodone
- Oxymetazoline
- Palbociclib
- Pantoprazole
- Paroxetine
- Penicillin G
- Penicillin V
- Permethrin
- Phenelzine
- Phenobarbital
- Phenylephrine
- Phenytoin
- Physostigmine
- Pioglitazone
- Piperacillin
- Piroxicam
- Pramipexole
- Pravastatin
- Praziquantel
- Prazosin
- Prednisolone
- Prednisone
- Pregabalin
- Procaine
- Promethazine
- Propofol
- Propranolol
- Pseudoephedrine
- Pyrazinamide
- Pyridostigmine
- Quetiapine
- Raloxifene
- Raltegravir
- Ramipril
- Ranitidine
- Rasagiline
- Remdesivir
- Ribavirin
- Riluzole
- Risperidone
- Rivaroxaban
- Rivastigmine
- Ropinirole
- Rosiglitazone
- Rosuvastatin
- Sacubitril
- Selegiline
- Sertraline
- Sevoflurane
- Sildenafil
- Simvastatin
- Sitagliptin
- Sofosbuvir
- Spironolactone
- Streptomycin
- Succinylcholine
- Sulfadiazine
- Sulfamethoxazole
- Sulfanilamide
- Sulfasalazine
- Sumatriptan
- Tadalafil
- Tamoxifen
- Tamsulosin
- Tapentadol
- Telmisartan
- Temazepam
- Temozolomide
- Tenofovir
- Terbinafine
- Tetracycline
- Thalidomide
- Ticagrelor
- Timolol
- Tiotropium
- Tofacitinib
- Topiramate
- Tramadol
- Tranexamic acid
- Tranylcypromine
- Trazodone
- Tretinoin
- Triamcinolone
- Trimethoprim
- Ursodiol
- Valacyclovir
- Valproic acid
- Valsartan
- Vardenafil
- Varenicline
- Venlafaxine
- Verapamil
- Voriconazole
- Vortioxetine
- Warfarin
- Xylometazoline
- Zanamivir
- Zidovudine
- Ziprasidone
- Zolpidem
- Zopiclone
Dyes and pigments
- Acridine orange
- Alizarin
- Allura red
- Astaxanthin
- Azobenzene
- Betanin
- Bilirubin
- Biliverdin
- Bixin
- Bromophenol blue
- Bromothymol blue
- Carminic acid
- Congo red
- Crocetin
- Crystal violet
- Cyanidin
- DAPI
- Delphinidin
- Eosin Y
- Erythrosine
- Ethidium bromide
- Fluorescein
- Hoechst 33342
- Indigo
- Indigo carmine
- Juglone
- Lawsone
- Luminol
- Lutein
- Malachite green
- Methyl orange
- Methyl red
- Methylene blue
- Nile red
- Phenol red
- Phenolphthalein
- Phthalocyanine
- Protoporphyrin IX
- Rhodamine B
- Shikonin
- Sudan I
- Sunset yellow
- Tartrazine
- Tyrian purple
- Zeaxanthin
Fatty acids and lipids
- 7-Dehydrocholesterol
- Acetoacetic acid
- Alpha-linolenic acid
- Arachidonic acid
- Beta-hydroxybutyric acid
- Beta-sitosterol
- Butyric acid
- Capric acid
- Caproic acid
- Caprylic acid
- Chenodeoxycholic acid
- Cholesterol
- Cholic acid
- Deoxycholic acid
- Docosahexaenoic acid
- Eicosapentaenoic acid
- Elaidic acid
- Ergosterol
- Farnesyl pyrophosphate
- Gamma-linolenic acid
- Glycocholic acid
- Lanosterol
- Lauric acid
- Linoleic acid
- Lithocholic acid
- Mevalonic acid
- Myristic acid
- Oleic acid
- Palmitic acid
- Palmitoleic acid
- Sphingosine
- Stigmasterol
- Taurocholic acid
Food, flavor and fragrance
- 2-Acetyl-1-pyrroline
- 2,5-Dimethylpyrazine
- Acesulfame
- Acetoin
- Allyl isothiocyanate
- Alpha-bisabolol
- Alpha-pinene
- Alpha-terpineol
- Ambroxide
- Anethole
- Aspartame
- Benzyl acetate
- Beta-caryophyllene
- Beta-ionone
- Butylated hydroxyanisole
- Butylated hydroxytoluene
- Cadaverine
- Carvacrol
- Carvone
- Cinnamaldehyde
- cis-Jasmone
- Citral
- Citronellol
- Coumarin
- Cyclamic acid
- Diacetyl
- Dimethyl sulfide
- Estragole
- Ethyl butyrate
- Ethyl vanillin
- Eucalyptol
- Eugenol
- Farnesene
- Furaneol
- Galaxolide
- Gamma-decalactone
- Geosmin
- Geraniol
- Gingerol
- Guaiacol
- Hedione
- Humulene
- Isoamyl acetate
- Leaf alcohol
- Limonene
- Linalool
- Maltol
- Menthone
- Methanethiol
- Methyl anthranilate
- Methyl jasmonate
- Methyl salicylate
- Muscone
- Myrcene
- Neotame
- Nootkatone
- Phenethyl alcohol
- Piperonal
- Putrescine
- Raspberry ketone
- Saccharin
- Safranal
- Safrole
- Skatole
- Sorbic acid
- Sucralose
- TBHQ
- Thymol
- Vanillin
- Zingerone
Hormones
- 17-Hydroxyprogesterone
- 20-Hydroxyecdysone
- Abscisic acid
- Aldosterone
- Allopregnanolone
- Androstenedione
- Androsterone
- Bombykol
- Corticosterone
- Cortisol
- Cortisone
- DHEA
- Dihydrotestosterone
- Ecdysone
- Estradiol
- Estriol
- Estrone
- Gibberellic acid
- Indole-3-acetic acid
- Jasmonic acid
- Leukotriene B4
- Melatonin
- Methyltestosterone
- Nandrolone
- Oxandrolone
- Pregnenolone
- Progesterone
- Prostacyclin
- Prostaglandin E1
- Prostaglandin E2
- Prostaglandin F2alpha
- Stanozolol
- Testosterone
- Thromboxane A2
- Thyroxine
- Trenbolone
- Triiodothyronine
Natural products
- Allicin
- Apigenin
- Artemisinin
- Atropine
- Berberine
- Betulinic acid
- Caffeic acid
- Camphor
- Camptothecin
- Cannabidiol
- Cannabinol
- Capsaicin
- Catechin
- Chlorogenic acid
- Curcumin
- Cytisine
- Daidzein
- DMT
- Ellagic acid
- Emodin
- Ephedrine
- Epicatechin
- Epigallocatechin gallate
- Ferulic acid
- Forskolin
- Gallic acid
- Genistein
- Ginkgolide B
- Harmine
- Hesperetin
- Hesperidin
- Huperzine A
- Hyoscyamine
- Hypericin
- Ibogaine
- Ibotenic acid
- Kaempferol
- Kavain
- LSD
- Luciferin
- Luteolin
- Menthol
- Mescaline
- Mitragynine
- Muscimol
- Naringenin
- Noscapine
- Oleanolic acid
- Oleuropein
- Papaverine
- Pilocarpine
- Piperine
- Podophyllotoxin
- Psilocin
- Psilocybin
- Quercetin
- Quinine
- Reserpine
- Resveratrol
- Rosmarinic acid
- Rutin
- Salicin
- Salvinorin A
- Scopolamine
- Silibinin
- Squalene
- Sulforaphane
- Tetrahydrocannabinol
- Thebaine
- Tubocurarine
- Ursolic acid
- Yohimbine
Neurotransmitters
- 5-Hydroxyindoleacetic acid
- 5-Hydroxytryptophan
- Acetylcholine
- Adenosine
- Agmatine
- Choline
- D-Serine
- Dopamine
- Epinephrine
- GABA
- Histamine
- Homovanillic acid
- Kynurenic acid
- N-Acetylaspartylglutamate
- N-Acetylserotonin
- Norepinephrine
- Octopamine
- Phenethylamine
- Quinolinic acid
- Serotonin
- Synephrine
- Tryptamine
- Tyramine
Nucleotides and nucleobases
- 5-Methylcytosine
- Adenine
- ADP
- AMP
- ATP
- CMP
- CTP
- Cyclic AMP
- Cytidine
- Cytosine
- dATP
- Deoxyadenosine
- Deoxycytidine
- Deoxyguanosine
- dTTP
- FMN
- GMP
- Guanine
- Guanosine
- Hypoxanthine
- IMP
- Inosine
- NAD+
- NADH
- NADP+
- Nicotinamide mononucleotide
- Nicotinamide riboside
- Orotic acid
- Pseudouridine
- S-Adenosylmethionine
- Thymidine
- Thymine
- UDP-glucose
- UMP
- Uracil
- Uric acid
- Uridine
- UTP
- Xanthine
School chemistry
- 1,3-Butadiene
- Acetaldehyde
- Acetic acid
- Acetone
- Acetylene
- Acrylic acid
- Acrylonitrile
- Adamantane
- Adipic acid
- Ammonia
- Aniline
- Anthracene
- Azulene
- Benzaldehyde
- Benzene
- Benzoic acid
- Biphenyl
- Butane
- Butanol
- Caprolactam
- Carbon dioxide
- Carbon monoxide
- Carbon tetrachloride
- Carbonic acid
- Catechol
- Chlorine
- Chlorobenzene
- Chloroform
- Citric acid
- Cubane
- Cumene
- Cyanuric acid
- Cyclobutane
- Cyclohexane
- Cyclohexene
- Cyclooctatetraene
- Cyclopentane
- Cyclopropane
- Dichlorodifluoromethane
- Dichloromethane
- Dimethyl ether
- EDTA
- Ethane
- Ethanol
- Ethylbenzene
- Ethylene
- Ethylene glycol
- Ethylene oxide
- Ethylenediamine
- Formaldehyde
- Formic acid
- Fumaric acid
- Furan
- Glycerol
- Heptane
- Hexamethylenetetramine
- Hexane
- HMX
- Hydrazine
- Hydrogen chloride
- Hydrogen cyanide
- Hydrogen fluoride
- Hydrogen peroxide
- Hydrogen sulfide
- Hydroquinone
- Hydroxylamine
- Imidazole
- Indole
- Isobutane
- Isooctane
- Isoprene
- Isopropanol
- Lactic acid
- Maleic acid
- Malic acid
- Melamine
- Methane
- Methanol
- Methylamine
- Naphthalene
- Nitric acid
- Nitrobenzene
- Nitrogen
- Nitromethane
- Nitrous oxide
- Octane
- Oxalic acid
- Oxygen
- Ozone
- Pentane
- PETN
- Phenanthrene
- Phenol
- Phosgene
- Phosphine
- Phosphoric acid
- Phthalic acid
- Picric acid
- Propane
- Propanol
- Propionic acid
- Propylene
- Purine
- Pyrene
- Pyridine
- Pyrimidine
- Pyrrole
- Pyruvic acid
- Quinoline
- RDX
- Resorcinol
- Silane
- Styrene
- Succinic acid
- Sulfur dioxide
- Sulfur trioxide
- Sulfuric acid
- Tartaric acid
- Tetrafluoroethylene
- Thiophene
- Toluene
- Trimethylamine
- Trinitrotoluene
- Urea
- Vinyl chloride
- Water
- Xylene
Solvents
- 1,2-Dichloroethane
- 1,2-Dimethoxyethane
- 1,4-Dioxane
- Acetic anhydride
- Acetonitrile
- Anisole
- Benzyl alcohol
- Butanone
- Carbon disulfide
- Cyclohexanone
- Diethyl ether
- Diethylene glycol
- Dimethyl sulfoxide
- Dimethylacetamide
- Dimethylformamide
- Ethanolamine
- Ethyl acetate
- Formamide
- Methyl acetate
- Methyl tert-butyl ether
- Morpholine
- N-Methyl-2-pyrrolidone
- Piperidine
- Propylene glycol
- tert-Butanol
- Tetrachloroethylene
- Tetrahydrofuran
- Trichloroethylene
- Triethylamine
- Trifluoroacetic acid
Stimulants
- Amphetamine
- Arecoline
- Armodafinil
- Caffeine
- Cathine
- Cathinone
- Cocaine
- Cotinine
- Dextroamphetamine
- Lisdexamfetamine
- MDMA
- Mephedrone
- Methamphetamine
- Methylhexanamine
- Methylphenidate
- Modafinil
- Nicotine
- Paraxanthine
- Phentermine
- Theobromine
- Theophylline
Sugars
- Allulose
- Alpha-D-glucose
- Arabinose
- Beta-D-glucose
- Cellobiose
- Deoxyribose
- Dihydroxyacetone
- Erythritol
- Fructose
- Fructose 1,6-bisphosphate
- Fucose
- Galactose
- Glucosamine
- Glucose
- Glucose 6-phosphate
- Glucuronic acid
- Glyceraldehyde
- Lactose
- Lactulose
- Maltitol
- Maltose
- Mannitol
- Mannose
- N-Acetylglucosamine
- Raffinose
- Rhamnose
- Ribose
- Ribulose 1,5-bisphosphate
- Sialic acid
- Sorbitol
- Sucrose
- Tagatose
- Trehalose
- Xylitol
- Xylose
Toxins and poisons
- Aconitine
- Acrolein
- Acrylamide
- Aflatoxin B1
- Amygdalin
- Anatoxin-a
- Atrazine
- Batrachotoxin
- Benzo[a]pyrene
- Bisphenol A
- Brodifacoum
- Cantharidin
- Chlorpyrifos
- Coniine
- Cyclosarin
- DDT
- Dioxin
- Domoic acid
- Ergotamine
- Fluoroacetic acid
- Glyphosate
- Gossypol
- Malathion
- Methyl isocyanate
- Muscarine
- Mustard gas
- Ochratoxin A
- Oleandrin
- Ouabain
- Paraquat
- Parathion
- Patulin
- Perfluorooctanesulfonic acid
- Perfluorooctanoic acid
- Sarin
- Saxitoxin
- Soman
- Strychnine
- T-2 toxin
- Tabun
- Tetrodotoxin
- VX