40S ribosomal protein S4 (LOC123191404) is a 265-residue protein from Triticum aestivum. This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: A0A1D5SLI4.
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The mean pLDDT of this model is 95.4 (very high overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 97% |
| 70 to 90 | Confident: backbone generally right | 2% |
| 50 to 70 | Low: treat with caution | 1% |
| Below 50 | Very low: often disordered regions | 0% |
What pLDDT means and how to read it
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 8R6F | EM | 2.34 Å | E=1-265 |
| 8JIW | EM | 2.88 Å | BE=1-265 |
| 8IP8 | EM | 2.9 Å | ja=1-265 |
| 8IP9 | EM | 3.0 Å | ja=1-265 |
| 8IPA | EM | 3.4 Å | ja=1-265 |
| 8IPB | EM | 3.4 Å | ja=1-265 |
MolViewer loads the AlphaFold model straight from AlphaFold DB into your browser. Show it as a cartoon, color by pLDDT, measure distances and angles, and load a PDB structure next to it to compare.