Large ribosomal subunit protein uL4 (LOC127489460) is a 402-residue protein from Oryctolagus cuniculus. This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: A0A5F9DCT1.
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The mean pLDDT of this model is 89.3 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 85% |
| 70 to 90 | Confident: backbone generally right | 3% |
| 50 to 70 | Low: treat with caution | 2% |
| Below 50 | Very low: often disordered regions | 10% |
What pLDDT means and how to read it
Component of the large ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell
Component of the large ribosomal subunit. May bind IPO9 with low affinity. Interacts with RBM3
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 7UCK | EM | 2.8 Å | C=16-375 |
| 9BDL | EM | 2.8 Å | AL04=16-377 |
| 7TOR | EM | 2.9 Å | AL04=16-377 |
| 7TOQ | EM | 3.1 Å | AL04=16-377 |
| 7UCJ | EM | 3.1 Å | C=16-375 |
| 9BDN | EM | 3.1 Å | AL04=16-377 |
| 9BDP | EM | 3.7 Å | AL04=16-377 |
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