Tcell receptor chain is a 281-residue protein from Mus musculus. This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: A0N8J3.
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The mean pLDDT of this model is 91.3 (very high overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 76% |
| 70 to 90 | Confident: backbone generally right | 19% |
| 50 to 70 | Low: treat with caution | 5% |
| Below 50 | Very low: often disordered regions | 0% |
What pLDDT means and how to read it
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 6MJJ | X-ray | 1.93 Å | D=109-126 |
| 6MJ4 | X-ray | 2.0 Å | D=96-126 |
| 6MIV | X-ray | 2.05 Å | D=96-126 |
| 6MJI | X-ray | 2.3 Å | D=109-126 |
| 6MJA | X-ray | 2.35 Å | D=109-126 |
| 6MJ6 | X-ray | 2.45 Å | D=96-126 |
| 6MIY | X-ray | 2.75 Å | D/H=109-126 |
| 4ZAK | X-ray | 2.82 Å | D=109-129 |
| 6MJQ | X-ray | 3.0 Å | D/H=109-126 |
MolViewer loads the AlphaFold model straight from AlphaFold DB into your browser. Show it as a cartoon, color by pLDDT, measure distances and angles, and load a PDB structure next to it to compare.