single-stranded DNA cytosine deaminase (APOBEC3H) is a 183-residue protein from Pan troglodytes. This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: B7T0U6.
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The mean pLDDT of this model is 91.4 (very high overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 76% |
| 70 to 90 | Confident: backbone generally right | 22% |
| 50 to 70 | Low: treat with caution | 2% |
| Below 50 | Very low: often disordered regions | 0% |
What pLDDT means and how to read it
Cytoplasm
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 5Z98 | X-ray | 2.2 Å | A/B=1-183 |
| 9E93 | EM | 3.58 Å | A/E=1-183 |
| 9E9V | EM | 4.0 Å | A/B/E=1-183 |
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