Chlorophyll a-b binding protein, chloroplastic is a 276-residue protein from Glycine max. This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: C6TEX2.
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The mean pLDDT of this model is 77.3 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 31% |
| 70 to 90 | Confident: backbone generally right | 47% |
| 50 to 70 | Low: treat with caution | 2% |
| Below 50 | Very low: often disordered regions | 20% |
What pLDDT means and how to read it
The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated
Plastid, chloroplast thylakoid membrane
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 2WSC | X-ray | 3.3 Å | 3=1-276 |
| 2WSF | X-ray | 3.48 Å | 3=1-276 |
| 2WSE | X-ray | 3.49 Å | 3=1-276 |
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