E3 ubiquitin-protein ligase Mdm2 (Mdm2) is a 458-residue protein from Rattus norvegicus. This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: D3ZVH5.
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The mean pLDDT of this model is 54.9 (low overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 21% |
| 70 to 90 | Confident: backbone generally right | 12% |
| 50 to 70 | Low: treat with caution | 8% |
| Below 50 | Very low: often disordered regions | 59% |
What pLDDT means and how to read it
Cytoplasm, Nucleus, nucleoplasm, Nucleus, nucleolus
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 8HSV | X-ray | 3.0 Å | E/F=191-208 |
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