60S ribosomal protein L4-like protein (CTHT_0061540) is a 365-residue protein from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719). This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: G0SFC3.
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The mean pLDDT of this model is 92.4 (very high overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 81% |
| 70 to 90 | Confident: backbone generally right | 16% |
| 50 to 70 | Low: treat with caution | 2% |
| Below 50 | Very low: often disordered regions | 1% |
What pLDDT means and how to read it
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 8PV7 | EM | 2.12 Å | LC=1-365 |
| 8PVL | EM | 2.19 Å | LC=1-365 |
| 9I78 | EM | 2.2 Å | LC=1-365 |
| 9I1W | EM | 2.38 Å | LC=1-365 |
| 5TQB | X-ray | 2.4 Å | A=1-277 |
| 8PVK | EM | 2.55 Å | LC=1-365 |
| 8PV1 | EM | 2.56 Å | LC=1-365 |
| 8PV2 | EM | 2.63 Å | LC=1-365 |
| 8I9Z | EM | 2.7 Å | LC=1-365 |
| 8IA0 | EM | 2.7 Å | LC=1-365 |
| 8I9X | EM | 2.8 Å | LC=1-365 |
| 8PV3 | EM | 2.8 Å | LC=1-365 |
| 8PV5 | EM | 2.86 Å | LC=1-365 |
| 7OLC | EM | 2.9 Å | LC=1-365 |
| 8PV4 | EM | 2.9 Å | LC=1-365 |
| 8PV8 | EM | 2.91 Å | LC=1-365 |
| 8PV6 | EM | 2.94 Å | LC=1-365 |
| 5TQC | X-ray | 3.0 Å | B=308-332 |
| 7OLD | EM | 3.0 Å | LC=1-365 |
| 8I9P | EM | 3.0 Å | LC=1-365 |
Showing 20 of 28 experimental structures (best resolution first).
MolViewer loads the AlphaFold model straight from AlphaFold DB into your browser. Show it as a cartoon, color by pLDDT, measure distances and angles, and load a PDB structure next to it to compare.