Small ribosomal subunit protein eS1 (RPS3A) is a 264-residue protein from Oryctolagus cuniculus. This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: G1TN72.
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The mean pLDDT of this model is 86.1 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 78% |
| 70 to 90 | Confident: backbone generally right | 4% |
| 50 to 70 | Low: treat with caution | 7% |
| Below 50 | Very low: often disordered regions | 11% |
What pLDDT means and how to read it
May play a role during erythropoiesis through regulation of transcription factor DDIT3
Component of the small ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains about 33 different proteins and 1 molecule of RNA (18S). The 60S subunit contains about 49 different proteins and 3 molecules of RNA (28S, 5.8S and 5S). Identified in a IGF2BP1-dependent mRNP granule complex containing untranslated mRNAs. Binds with high…
Cytoplasm, Nucleus, Nucleus, nucleolus
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 9H6Y | EM | 2.9 Å | D=1-264 |
| 9H74 | EM | 2.9 Å | D=1-264 |
| 6YAL | EM | 3.0 Å | D=1-264 |
| 8P03 | EM | 3.04 Å | D=19-233 |
| 8P09 | EM | 3.3 Å | D=19-233 |
| 6YAN | EM | 3.48 Å | D=19-233 |
| 6YAM | EM | 3.6 Å | D=1-264 |
| 5K0Y | EM | 5.8 Å | i=19-233 |
| 9CPA | EM | 6.0 Å | x=1-264 |
| 4KZY | X-ray | 7.01 Å | B=1-264 |
| 4KZZ | X-ray | 7.03 Å | B=1-264 |
| 4KZX | X-ray | 7.81 Å | B=1-264 |
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