ATP synthase F(0) complex subunit C2, mitochondrial (ATP5MC2) is a 143-residue protein from Bos taurus. This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: P07926.
Explore in 3D Color by confidence AlphaFold DB UniProt
The mean pLDDT of this model is 72.4 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 50% |
| 70 to 90 | Confident: backbone generally right | 4% |
| 50 to 70 | Low: treat with caution | 18% |
| Below 50 | Very low: often disordered regions | 29% |
What pLDDT means and how to read it
Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex…
F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c. Interacts with DNAJC30; interaction is direct
Mitochondrion membrane
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 6Z1R | EM | 3.29 Å | K/L/M/N/O/P/Q/R=69-143 |
| 6ZQM | EM | 3.29 Å | K/L/M/N/O/P/Q/R=69-143 |
| 6Z1U | EM | 3.47 Å | K/L/M/N/O/P/Q/R=69-143 |
| 6ZG7 | EM | 3.49 Å | K/L/M/N/O/P/Q/R=69-143 |
| 6ZG8 | EM | 3.49 Å | K/L/M/N/O/P/Q/R=69-143 |
| 6ZIT | EM | 3.49 Å | K/L/R=69-143 |
| 6ZIK | EM | 3.66 Å | K/L/M/N/O/P/Q/R=69-143 |
| 6ZQN | EM | 4.0 Å | K/L/M/N/O/P/Q/R=69-143 |
| 7AJF | EM | 8.45 Å | AK/AL/AM/AN/AO/AP/AQ/AR/K/L/M/N/O/P/Q/R=69-143 |
| 7AJD | EM | 9.0 Å | AK/AL/AM/AN/AO/AP/AQ/AR/K/L/M/N/O/P/Q/R=69-143 |
| 7AJB | EM | 9.2 Å | AK/AL/AM/AN/AO/AP/AQ/AR/K/L/M/N/O/P/Q/R=69-143 |
| 7AJE | EM | 9.4 Å | AK/AL/AM/AN/AO/AP/AQ/AR/K/L/M/N/O/P/Q/R=69-143 |
| 7AJH | EM | 9.7 Å | AK/AL/AM/AN/AO/AP/AQ/AR/K/L/M/N/O/P/Q/R=69-143 |
| 7AJG | EM | 10.7 Å | AK/AL/AM/AN/AO/AP/AQ/AR/K/L/M/N/O/P/Q/R=69-143 |
| 7AJI | EM | 11.4 Å | AK/AL/AM/AN/AO/AP/AQ/AR/K/L/M/N/O/P/Q/R=69-143 |
| 7AJC | EM | 11.9 Å | AK/AL/AM/AN/AO/AP/AQ/AR/K/L/M/N/O/P/Q/R=69-143 |
| 7AJJ | EM | 13.1 Å | AK/AL/AM/AN/AO/AP/AQ/AR/K/L/M/N/O/P/Q/R=69-143 |
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