Small ribosomal subunit protein uS4 (rpsD) is a 206-residue protein from Escherichia coli (strain K12). This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: P0A7V8.
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The mean pLDDT of this model is 93.6 (very high overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 85% |
| 70 to 90 | Confident: backbone generally right | 14% |
| 50 to 70 | Low: treat with caution | 1% |
| Below 50 | Very low: often disordered regions | 0% |
What pLDDT means and how to read it
One of two assembly initiator proteins for the 30S subunit, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
Part of the 30S ribosomal subunit (PubMed:10094780, PubMed:1100394, PubMed:12244297, PubMed:12809609, PubMed:16272117, PubMed:27906160, PubMed:27906161, PubMed:27934701, PubMed:28077875, PubMed:4587210, PubMed:7556101). Contacts protein S5. With proteins S3 and S5 encircles the mRNA as it enters the ribosome, which may play a role in mRNA helicase processivity (PubMed:15652481). Some nascent…
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 8B0X | EM | 1.55 Å | D=1-206 |
| 9Q87 | EM | 1.55 Å | D=1-206 |
| 8CGJ | EM | 1.79 Å | D=1-206 |
| 8FTO | EM | 1.85 Å | D=1-206 |
| 9GHE | EM | 1.87 Å | D=1-206 |
| 8CGU | EM | 1.89 Å | D=1-206 |
| 8AYE | EM | 1.96 Å | D=1-206 |
| 7K00 | EM | 1.98 Å | D=1-206 |
| 8QOA | EM | 2.0 Å | D=1-206 |
| 9FDA | EM | 2.0 Å | D=1-206 |
| 8G6W | EM | 2.02 Å | D=1-206 |
| 8BIL | EM | 2.04 Å | h=1-206 |
| 8BIM | EM | 2.04 Å | h=1-206 |
| 8CEP | EM | 2.04 Å | D=1-206 |
| 8CAI | EM | 2.08 Å | D=1-206 |
| 9H8G | EM | 2.09 Å | D=1-206 |
| 4YBB | X-ray | 2.1 Å | AD/BD=2-206 |
| 8EMM | EM | 2.1 Å | D=1-206 |
| 9XTC | EM | 2.1 Å | D=1-206 |
| 8BGE | EM | 2.11 Å | h=1-206 |
Showing 20 of 546 experimental structures (best resolution first).
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