Large ribosomal subunit protein uL5 (rpl5) is a 177-residue protein from Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809). This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: P14124.
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The mean pLDDT of this model is 89.5 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 80% |
| 70 to 90 | Confident: backbone generally right | 15% |
| 50 to 70 | Low: treat with caution | 1% |
| Below 50 | Very low: often disordered regions | 5% |
What pLDDT means and how to read it
Component of the large ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell
Part of the 50S ribosomal subunit (PubMed:10937989, PubMed:3196689). Interacts with protein uL18 and the 5S rRNA, and probably with tRNAs (PubMed:14561884). Forms a bridge to the 30S subunit in the 70S ribosome (By similarity)
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 1VQ8 | X-ray | 2.2 Å | D=1-177 |
| 1VQO | X-ray | 2.2 Å | D=1-177 |
| 1VQP | X-ray | 2.25 Å | D=1-177 |
| 1VQK | X-ray | 2.3 Å | D=1-177 |
| 1VQL | X-ray | 2.3 Å | D=1-177 |
| 1VQM | X-ray | 2.3 Å | D=1-177 |
| 1FFK | X-ray | 2.4 Å | D=2-177 |
| 1JJ2 | X-ray | 2.4 Å | D=2-177 |
| 1S72 | X-ray | 2.4 Å | D=1-177 |
| 1VQ9 | X-ray | 2.4 Å | D=1-177 |
| 1VQN | X-ray | 2.4 Å | D=1-177 |
| 1YHQ | X-ray | 2.4 Å | D=1-177 |
| 3CC2 | X-ray | 2.4 Å | D=1-177 |
| 4V9F | X-ray | 2.4 Å | D=1-177 |
| 1VQ7 | X-ray | 2.5 Å | D=1-177 |
| 3CCM | X-ray | 2.55 Å | D=1-177 |
| 1VQ5 | X-ray | 2.6 Å | D=1-177 |
| 1YIJ | X-ray | 2.6 Å | D=1-177 |
| 1YI2 | X-ray | 2.65 Å | D=1-177 |
| 1VQ4 | X-ray | 2.7 Å | D=1-177 |
Showing 20 of 73 experimental structures (best resolution first).
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