Chromatin modification-related protein EAF6 (EAF6) is a 113-residue protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c). This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: P47128.
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The mean pLDDT of this model is 67.7 (low overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 23% |
| 70 to 90 | Confident: backbone generally right | 20% |
| 50 to 70 | Low: treat with caution | 34% |
| Below 50 | Very low: often disordered regions | 24% |
What pLDDT means and how to read it
Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. The NuA4 complex is also involved in DNA repair (PubMed:15485911, PubMed:15353583). Component of the NuA3 histone acetyltransferase complex. The NuA3 HAT complex has 2 functionally distinct forms. NuA3a binds H3K4me3, through the PHD finger of YNG1, and acetylates H3K14 at the promoter region of actively transcribed genes to promote transcription initiation. NuA3b binds H3K36me3 at the coding regions of actively transcribed genes, through the PWWP domain of PDP3, and coordinates transcription elongation…
Component of the NuA4 histone acetyltransferase complex composed of at least ACT1, ARP4, YAF9, VID21, SWC4, EAF3, EAF5, EAF6, EAF7, EPL1, ESA1, TRA1 and YNG2 (PubMed:15485911, PubMed:15353583, PubMed:27594449, PubMed:36198799). Component of the NuA3 histone acetyltransferase (HAT) complex. The NuA3 HAT complex has 2 functionally distinct forms that participate in transcription. The NuA3b HAT…
Nucleus
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 5J9T | X-ray | 2.7 Å | B/F/J=1-113 |
| 5J9W | X-ray | 2.8 Å | B/F/J=1-113 |
| 5J9U | X-ray | 2.95 Å | B/F/J=1-113 |
| 9VKW | EM | 3.13 Å | D=1-113 |
| 9UUS | EM | 3.2 Å | D=1-113 |
| 5J9Q | X-ray | 3.25 Å | B/F/J=1-113 |
| 7VVU | EM | 3.4 Å | Y=1-113 |
| 9UUO | EM | 3.68 Å | F=1-113 |
| 8X2X | EM | 3.8 Å | L=1-113 |
| 8X2Z | EM | 3.9 Å | L=1-113 |
| 8X2Y | EM | 4.1 Å | L=1-113 |
| 8X30 | EM | 4.3 Å | P=1-113 |
| 8X32 | EM | 4.4 Å | L=1-113 |
| 8X31 | EM | 6.2 Å | L=1-113 |
| 7VVZ | EM | 8.8 Å | Y=1-113 |
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