RuvB-like protein 1 (RVB1) is a 463-residue protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c). This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: Q03940.
Explore in 3D Color by confidence AlphaFold DB UniProt
The mean pLDDT of this model is 85.9 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 64% |
| 70 to 90 | Confident: backbone generally right | 23% |
| 50 to 70 | Low: treat with caution | 8% |
| Below 50 | Very low: often disordered regions | 5% |
What pLDDT means and how to read it
DNA helicase which participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. The SWR1 complex mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. The INO80 complex remodels chromatin by shifting nucleosomes. Its ability to induce transcription of some phosphate-responsive genes is modulated by inositol polyphosphates. The INO80 complex is involved in DNA repair by associating to 'Ser-129' phosphorylated H2A histones as a response to DNA damage. RVB1 recruits ARP5 to the INO80 complex. During transcription may recruit SPT15/TBP to the TATA-boxes…
Probably forms a homohexamer. Interacts with RVB2 and may form heterododecamers with RVB2. Component of the SWR1 chromatin remodeling complex composed of at least ACT1, ARP4, RVB1, RVB2, ARP6, YAF9, VPS71, VPS72, SWC3, SWC4, SWC5, SWC7 and SWR1, and perhaps BDF1. Component of the chromatin-remodeling INO80 complex, at least composed of ARP4, ARP5, ARP8, RVB1, RVB2, TAF14, NHP10, IES1, IES3,…
Nucleus
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 9C9Z | EM | 2.55 Å | T/V/X=1-463 |
| 8ETW | EM | 2.64 Å | T/V/X=21-463 |
| 8ETU | EM | 2.8 Å | T/V/X=21-463 |
| 9CAT | EM | 2.9 Å | T/V/X=1-463 |
| 9C9G | EM | 2.91 Å | T/V/X=1-463 |
| 9CCD | EM | 3.01 Å | T/V/X=1-463 |
| 8ETS | EM | 3.04 Å | T/V/X=21-463 |
| 9C9S | EM | 3.09 Å | T/V/X=1-463 |
| 9C9T | EM | 3.16 Å | T/V/X=1-463 |
| 9OB1 | EM | 3.2 Å | T/V/X=1-463 |
| 9B1D | EM | 3.3 Å | E/G/I=1-463 |
| 9CAN | EM | 3.3 Å | T/V/X=1-463 |
| 8EUF | EM | 3.41 Å | T/V/X=1-463 |
| 8EU9 | EM | 3.48 Å | T/V/X=21-463 |
| 8QYV | EM | 3.5 Å | T/V/X=1-463 |
| 6GEJ | EM | 3.6 Å | T/V/X=1-463 |
| 6GEN | EM | 3.6 Å | T/V/X=1-463 |
| 8QKU | EM | 3.8 Å | T/V/X=1-463 |
| 8QZ0 | EM | 3.8 Å | T/V/X=1-463 |
| 9B1E | EM | 4.4 Å | E/G/I=1-463 |
Showing 20 of 22 experimental structures (best resolution first).
MolViewer loads the AlphaFold model straight from AlphaFold DB into your browser. Show it as a cartoon, color by pLDDT, measure distances and angles, and load a PDB structure next to it to compare.