60S ribosome subunit biogenesis protein NIP7 (NIP7) is a 181-residue protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c). This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: Q08962.
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The mean pLDDT of this model is 93.2 (very high overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 81% |
| 70 to 90 | Confident: backbone generally right | 18% |
| 50 to 70 | Low: treat with caution | 1% |
| Below 50 | Very low: often disordered regions | 0% |
What pLDDT means and how to read it
Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly
Interacts with NOP8 and RRP43. Interacts with pre-ribosome complex. May bind to RNA
Cytoplasm, Nucleus, nucleolus
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 8V83 | EM | 2.53 Å | l=1-181 |
| 8V87 | EM | 2.66 Å | l=1-181 |
| 8V84 | EM | 2.7 Å | l=1-181 |
| 7NAC | EM | 3.04 Å | l=1-181 |
| 7R7A | EM | 3.04 Å | l=1-181 |
| 7R6K | EM | 3.17 Å | l=1-181 |
| 6ELZ | EM | 3.3 Å | l=1-181 |
| 7R7C | EM | 3.71 Å | l=1-181 |
| 6EM5 | EM | 4.3 Å | l=1-181 |
| 7OHR | EM | 4.72 Å | l=1-181 |
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