snRNA-activating protein complex subunit 1 (SNAPC1) is a 368-residue protein from Homo sapiens. This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: Q16533.
Explore in 3D Color by confidence AlphaFold DB UniProt
The mean pLDDT of this model is 71.1 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 34% |
| 70 to 90 | Confident: backbone generally right | 25% |
| 50 to 70 | Low: treat with caution | 12% |
| Below 50 | Very low: often disordered regions | 29% |
What pLDDT means and how to read it
Part of the SNAPc complex required for the transcription of both RNA polymerase II and III small-nuclear RNA genes. Binds to the proximal sequence element (PSE), a non-TATA-box basal promoter element common to these 2 types of genes. Recruits TBP and BRF2 to the U6 snRNA TATA box
Part of the SNAPc complex composed of 5 subunits: SNAPC1, SNAPC2, SNAPC3, SNAPC4 and SNAPC5. SNAPC1 interacts with SNAPC3, SNAPC4 and TBP
Nucleus
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 7ZWD | EM | 3.0 Å | a=1-368 |
| 7ZX8 | EM | 3.0 Å | a=1-368 |
| 9K3U | EM | 3.0 Å | 1=1-368 |
| 7ZWC | EM | 3.2 Å | a=1-368 |
| 9FSO | EM | 3.28 Å | U=1-368 |
| 9LXN | EM | 3.3 Å | 1=1-368 |
| 9FSP | EM | 3.39 Å | U=1-368 |
| 7ZX7 | EM | 3.4 Å | a=1-368 |
| 8IUH | EM | 3.4 Å | 1=1-368 |
| 7XUR | EM | 3.49 Å | C=1-268 |
| 7ZXE | EM | 3.5 Å | a=1-368 |
| 9K3V | EM | 3.5 Å | 1=1-368 |
| 9FSQ | EM | 3.51 Å | U=1-368 |
| 9FSR | EM | 3.76 Å | U=1-368 |
| 8ITY | EM | 3.9 Å | 1=1-368 |
| 8IUE | EM | 4.1 Å | 1=1-368 |
| 9FSS | EM | 4.14 Å | U=1-368 |
| 9K3B | EM | 4.8 Å | 1=1-368 |
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