Encapsulin nanocompartment cargo protein EncD (encD) is a 109-residue protein from Myxococcus xanthus (strain DK1622). This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: Q1D9P3.
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The mean pLDDT of this model is 70.5 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 37% |
| 70 to 90 | Confident: backbone generally right | 13% |
| 50 to 70 | Low: treat with caution | 24% |
| Below 50 | Very low: often disordered regions | 27% |
What pLDDT means and how to read it
Cargo protein of a type 1 encapsulin nanocompartment. May help nucleate Fe atoms in the interior of the encapsulin nanocompartment (Probable). Present in about 47 copies/encapsulin nanocompartment (PubMed:25024436)
Encapsulin nanocompartment
Compare the prediction with experimentally determined structures of the same protein:
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