TRAP transporter small permease protein (VC1778) is a 170-residue protein from Photobacterium profundum (strain SS9). This is its AlphaFold structure prediction, created 1 Jun 2022. UniProt accession: Q6LPW0.
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The mean pLDDT of this model is 73.4 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 2% |
| 70 to 90 | Confident: backbone generally right | 63% |
| 50 to 70 | Low: treat with caution | 34% |
| Below 50 | Very low: often disordered regions | 2% |
What pLDDT means and how to read it
Part of the tripartite ATP-independent periplasmic (TRAP) transport system
The complex comprises the extracytoplasmic solute receptor protein and the two transmembrane proteins
Cell inner membrane
Compare the prediction with experimentally determined structures of the same protein:
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