SLIT and NTRK-like protein 2 (Slitrk2) is a 846-residue protein from Mus musculus. This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: Q810C0.
Explore in 3D Color by confidence AlphaFold DB UniProt
The mean pLDDT of this model is 67.3 (low overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 29% |
| 70 to 90 | Confident: backbone generally right | 29% |
| 50 to 70 | Low: treat with caution | 7% |
| Below 50 | Very low: often disordered regions | 36% |
What pLDDT means and how to read it
It is involved in synaptogenesis (PubMed:25989451, PubMed:35840571). Promotes excitatory synapse differentiation (By similarity). Suppresses neurite outgrowth (PubMed:14550773). Involved in the negative regulation of NTRK2 (PubMed:35840571)
Interacts with PTPRD; this interaction is PTPRD splicing-dependent and may induce pre-synaptic differentiation. Interacts with NTRK2 (By similarity)
Membrane, Cell membrane, Cell projection, dendrite
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 4Y61 | X-ray | 3.36 Å | B=1-266 |
MolViewer loads the AlphaFold model straight from AlphaFold DB into your browser. Show it as a cartoon, color by pLDDT, measure distances and angles, and load a PDB structure next to it to compare.