NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial (Ndufs2) is a 463-residue protein from Mus musculus. This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: Q91WD5.
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The mean pLDDT of this model is 89.0 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 80% |
| 70 to 90 | Confident: backbone generally right | 12% |
| 50 to 70 | Low: treat with caution | 2% |
| Below 50 | Very low: often disordered regions | 6% |
What pLDDT means and how to read it
Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) which catalyzes electron transfer from NADH through the respiratory chain, using ubiquinone as an electron acceptor (PubMed:26437605, PubMed:29887397, PubMed:31297047, PubMed:38575788). Essential for the catalytic activity and assembly of complex I (PubMed:26437605, PubMed:29887397, PubMed:31297047). Redox-sensitive, critical component of the oxygen-sensing pathway in the pulmonary vasculature which plays a key role in acute pulmonary oxygen-sensing and hypoxic pulmonary vasoconstriction (PubMed:30922174). Plays an important role in carotid body sensing of hypoxia (PubMed:26437605, PubMed:29887397).…
Core subunit of respiratory chain NADH dehydrogenase (Complex I) which is composed of 45 different subunits (PubMed:38575788). Component of the iron-sulfur (IP) fragment of the enzyme. Interacts with NDUFAF3. Interacts with NDUFAF7 (By similarity). Interacts with CERS2 (PubMed:32279995)
Mitochondrion inner membrane
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 8OM1 | EM | 2.39 Å | D=1-463 |
| 8OLT | EM | 2.84 Å | D=1-463 |
| 8RGR | EM | 2.9 Å | D=1-463 |
| 6ZTQ | EM | 3.0 Å | D=1-463 |
| 8RGP | EM | 3.0 Å | D=1-463 |
| 8RGQ | EM | 3.0 Å | D=1-463 |
| 7B93 | EM | 3.04 Å | D=1-463 |
| 6ZR2 | EM | 3.1 Å | D=1-463 |
| 8RGT | EM | 3.1 Å | D=1-463 |
| 8XNL | EM | 3.1 Å | D=1-463 |
| 7AK5 | EM | 3.17 Å | D=1-463 |
| 8CA3 | EM | 3.2 Å | D=1-463 |
| 8IAP | EM | 3.2 Å | D=1-463 |
| 8IBA | EM | 3.2 Å | D=1-463 |
| 8IC3 | EM | 3.2 Å | D=1-463 |
| 8IC4 | EM | 3.2 Å | D=1-463 |
| 6G2J | EM | 3.3 Å | D=1-463 |
| 8IB5 | EM | 3.3 Å | D=1-463 |
| 8IB6 | EM | 3.3 Å | D=1-463 |
| 8IBB | EM | 3.3 Å | D=1-463 |
Showing 20 of 52 experimental structures (best resolution first).
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