Nuclear pore complex protein Nup88 (NUP88) is a 741-residue protein from Homo sapiens. This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: Q99567.
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The mean pLDDT of this model is 79.4 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 41% |
| 70 to 90 | Confident: backbone generally right | 36% |
| 50 to 70 | Low: treat with caution | 11% |
| Below 50 | Very low: often disordered regions | 12% |
What pLDDT means and how to read it
Component of nuclear pore complex
Interacts with NUP214/CAN (PubMed:30543681, PubMed:9049309). Interacts with NUP62 and NUP98 (PubMed:30543681)
Nucleus, nuclear pore complex
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 7MNI | X-ray | 2.0 Å | A/C=1-493 |
| 7R5K | EM | 12.0 Å | W0=1-741 |
| 7R5J | EM | 50.0 Å | W0=1-741 |
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