Lymphocyte antigen 96 (Ly96) is a 160-residue protein from Mus musculus. This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: Q9JHF9.
Explore in 3D Color by confidence AlphaFold DB UniProt
The mean pLDDT of this model is 86.8 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 69% |
| 70 to 90 | Confident: backbone generally right | 16% |
| 50 to 70 | Low: treat with caution | 6% |
| Below 50 | Very low: often disordered regions | 8% |
What pLDDT means and how to read it
Binds bacterial lipopolysaccharide (LPS) (PubMed:22532668). Cooperates with TLR4 in the innate immune response to bacterial lipopolysaccharide (LPS), and with TLR2 in the response to cell wall components from Gram-positive and Gram-negative bacteria. Enhances TLR4-dependent activation of NF-kappa-B. Cells expressing both LY96 and TLR4, but not TLR4 alone, respond to LPS (PubMed:10725698)
Heterogeneous homomer formed from homodimers; disulfide-linked (By similarity). Belongs to the lipopolysaccharide (LPS) receptor, a multi-protein complex containing at least CD14, LY96 and TLR4 (PubMed:10725698, PubMed:20133493, PubMed:24380872). Binds to the extracellular domain of TLR4 (PubMed:10725698, PubMed:17803912, PubMed:20133493, PubMed:22532668, PubMed:24380872). Binds to the…
Secreted, extracellular space, Secreted
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 7MLM | X-ray | 2.1 Å | C=19-160 |
| 3VQ2 | X-ray | 2.48 Å | C/D=17-160 |
| 5IJC | X-ray | 2.57 Å | C/D=19-160 |
| 8WQT | EM | 2.6 Å | C/D=19-160 |
| 8WRY | EM | 2.6 Å | C/D=19-160 |
| 3VQ1 | X-ray | 2.7 Å | C/D=17-160 |
| 5IJD | X-ray | 2.7 Å | C/D=19-160 |
| 2Z64 | X-ray | 2.84 Å | C=21-155 |
| 5IJB | X-ray | 2.91 Å | C/D=19-160 |
| 8WSA | EM | 3.1 Å | C/D=19-160 |
MolViewer loads the AlphaFold model straight from AlphaFold DB into your browser. Show it as a cartoon, color by pLDDT, measure distances and angles, and load a PDB structure next to it to compare.