Vacuolar protein sorting-associated protein 72 homolog (YL-1) is a 351-residue protein from Drosophila melanogaster. This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: Q9VKM6.
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The mean pLDDT of this model is 78.1 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 34% |
| 70 to 90 | Confident: backbone generally right | 36% |
| 50 to 70 | Low: treat with caution | 21% |
| Below 50 | Very low: often disordered regions | 9% |
What pLDDT means and how to read it
Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of select genes principally by acetylation of histone H4 'Lys-12' (PubMed:32432549). Component of a SWR1-like complex that incorporates H2A.V genome-wide and specifically at active promoters, in an ATP-dependent manner (PubMed:32432549). Component of the Tip60 chromatin-remodeling complex that upon induction of DNA double-strand breaks, mediates the ATP-dependent exchange of unmodified histone H2AV for its phosphorylated and acetylated form H2AVK5acS138ph, leading to transcriptional regulation of selected genes by chromatin remodeling (PubMed:15528408, PubMed:16299513)
Component of the NuA4 histone acetyltransferase complex at least composed of dom/Domino, Brd8, MRG15, YL-1, MrgBP, pont/Pontin, rept/Reptin, DMAP1, Tip60, Ing3, Nipped-A, E(Pc), Gas41 and Bap55 (PubMed:32432549). Component of a SWR1-like complex at least composed of dom/Domino, Brd8, MrgBP, YL-1, Gas41, Bap55, Arp6, DMAP1, MRG15, pont/Pontin, rept/Reptin and Hcf (PubMed:32432549). Component of…
Nucleus, Chromosome
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 5CHL | X-ray | 1.89 Å | A=2-75 |
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