Ubiquitin thioesterase otubain-like (otub-1) is a 284-residue protein from Caenorhabditis elegans. This is its AlphaFold structure prediction, created 1 Aug 2025. UniProt accession: Q9XVR6.
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The mean pLDDT of this model is 89.9 (confident overall). pLDDT is AlphaFold's per-residue confidence score from 0 to 100. In MolViewer, choose the B-factor color scheme to color the model by pLDDT, because AlphaFold stores it in the B-factor column.
| pLDDT band | Meaning | Share of residues |
|---|---|---|
| Above 90 | Very high: backbone and side chains are usually accurate | 76% |
| 70 to 90 | Confident: backbone generally right | 15% |
| 50 to 70 | Low: treat with caution | 1% |
| Below 50 | Very low: often disordered regions | 9% |
What pLDDT means and how to read it
Hydrolase that can remove conjugated ubiquitin from proteins and plays an important regulatory role at the level of protein turnover by preventing degradation. Specifically cleaves 'Lys-48'-linked polyubiquitin
Compare the prediction with experimentally determined structures of the same protein:
| PDB ID | Method | Resolution | Chains and residues |
|---|---|---|---|
| 4DHI | X-ray | 1.8 Å | B=1-284 |
| 4LDT | X-ray | 1.9 Å | A=45-284 |
| 4DHJ | X-ray | 2.35 Å | A/E/I/L=1-284 |
| 4DHZ | X-ray | 3.11 Å | A=45-284 |
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