Deoxycytidine 3D structure

Deoxycytidine (also called 2'-deoxycytidine, Deoxyribose cytidine) has the formula C9H13N3O4 and a molar mass of 227.22 g/mol. The model above is PubChem's computed 3D conformer: drag to rotate, scroll to zoom, and use the measurement tools to read bond lengths and angles.

Formula
C9H13N3O4
Molar mass
227.22 g/mol
PubChem CID
13711
Heavy atoms
16
Category
Nucleotides and nucleobases

Explore in 3D Space-filling model PubChem

Identifiers

IUPAC name4-amino-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one
SMILESC1[C@@H]([C@H](O[C@H]1N2C=CC(=NC2=O)N)CO)O
PubChem CID13711
Other names2'-deoxycytidine, Deoxyribose cytidine, Cytosine deoxyriboside, dCYD, Doxecitine

How to read the 3D model

Atoms use the standard CPK colors: carbon gray, hydrogen white, oxygen red, nitrogen blue, sulfur yellow. Switch to Spacefill to see the molecule's overall shape and size, or Stick for a clear view of the bonds. Click two atoms in distance mode to measure a bond length in ångströms.

3D coordinates are PubChem's computed conformer, one low-energy shape of the molecule. Flexible molecules can take many other shapes.

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