Nirmatrelvir 3D structure

Nirmatrelvir (also called Paxlovid, SARS-CoV-2 3CLpro Inhibitor PF-07321332) has the formula C23H32F3N5O4 and a molar mass of 499.5 g/mol. The model above is PubChem's computed 3D conformer: drag to rotate, scroll to zoom, and use the measurement tools to read bond lengths and angles.

Formula
C23H32F3N5O4
Molar mass
499.5 g/mol
PubChem CID
155903259
Heavy atoms
35
Category
Common drugs

Explore in 3D Space-filling model PubChem

Identifiers

IUPAC name(1R,2S,5S)-N-[(1S)-1-cyano-2-[(3S)-2-oxopyrrolidin-3-yl]ethyl]-3-[(2S)-3,3-dimethyl-2-[(2,2,2-trifluoroacetyl)amino]butanoyl]-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide
SMILESCC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)[C@H](C(C)(C)C)NC(=O)C(F)(F)F)C(=O)N[C@@H](C[C@@H]3CCNC3=O)C#N)C
PubChem CID155903259
Other namesPaxlovid, SARS-CoV-2 3CLpro Inhibitor PF-07321332, SARS-CoV-2-3CL Protease Inhibitor PF-07321332, Paxlovid-d9, ZGW

How to read the 3D model

Atoms use the standard CPK colors: carbon gray, hydrogen white, oxygen red, nitrogen blue, sulfur yellow. Switch to Spacefill to see the molecule's overall shape and size, or Stick for a clear view of the bonds. Click two atoms in distance mode to measure a bond length in ångströms.

3D coordinates are PubChem's computed conformer, one low-energy shape of the molecule. Flexible molecules can take many other shapes.

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