Thymidine 3D structure

Thymidine (also called 2'-Deoxythymidine, DThyd) has the formula C10H14N2O5 and a molar mass of 242.23 g/mol. The model above is PubChem's computed 3D conformer: drag to rotate, scroll to zoom, and use the measurement tools to read bond lengths and angles.

Formula
C10H14N2O5
Molar mass
242.23 g/mol
PubChem CID
5789
Heavy atoms
17
Category
Nucleotides and nucleobases

Explore in 3D Space-filling model PubChem

Identifiers

IUPAC name1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-5-methylpyrimidine-2,4-dione
SMILESCC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO)O
PubChem CID5789
Other names2'-Deoxythymidine, DThyd, Thymidin, Thymine-2-desoxyriboside, 5-Methyl-2'-deoxyuridine

How to read the 3D model

Atoms use the standard CPK colors: carbon gray, hydrogen white, oxygen red, nitrogen blue, sulfur yellow. Switch to Spacefill to see the molecule's overall shape and size, or Stick for a clear view of the bonds. Click two atoms in distance mode to measure a bond length in ångströms.

3D coordinates are PubChem's computed conformer, one low-energy shape of the molecule. Flexible molecules can take many other shapes.

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