Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S Ribosome. Determined by electron microscopy at 12.8 Å resolution. Released 1 Apr 2003.
Explore 1MVR in 3D Show helices and sheets RCSB PDB PDBe
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|---|---|---|---|---|
| mRNA, triplet codon (A-site) | 1 | RNA | 3 | Escherichia coli | |
| Helix 34 of 16S rRNA | A | RNA | 45 | Escherichia coli | |
| Helix 44 of 16S rRNA | B | RNA | 96 | Escherichia coli | |
| Helix 69 of 23S rRNA | C | RNA | 19 | Escherichia coli | |
| Helix 89 of 23S rRNA | D | RNA | 59 | Escherichia coli | |
| Helix 93 of 23S rRNA | E | RNA | 27 | Escherichia coli | |
| 30S ribosomal protein S12 | O | protein | 135 | Escherichia coli | Q5SHN3 (AlphaFold model) |
| 50S ribosomal protein L11 | L | protein | 140 | Escherichia coli | P29395 (AlphaFold model) |
>1MVR_1 mRNA, triplet codon (A-site) (chains 1) UUU
>1MVR_2 Helix 34 of 16S rRNA (chains A) AGGUGCUGCAUGGCCGUCGUCAACGACGUCUGGUCAGCAUGGCCC
>1MVR_3 Helix 44 of 16S rRNA (chains B) CGCCCGUCACGCCAUGGGAGCGGGCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGGCG CCGAGGGUAGGGCCCGUGACUGGGGCGAAGUCGUAA
>1MVR_4 Helix 69 of 23S rRNA (chains C) GGCCGUAACUAUAACGGUC
>1MVR_5 Helix 89 of 23S rRNA (chains D) AUAACAGGCUGAUCUCCCCCGAGCGUCCACAGCGGCGGGGAGGUUUGGCACCUCGAUGU
>1MVR_6 Helix 93 of 23S rRNA (chains E) GUUCAGAACGUCGUGAGACAGUUCGGU
>1MVR_7 30S RIBOSOMAL PROTEIN S12 (chains O) MVALPTINQLVRKGREKVRKKSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRL TSGYEVTAYIPGEGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGVYDAAGVKDRKKSRSKY GTKKPKEAAKTAAKK
>1MVR_8 50S ribosomal protein L11 (chains L) AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVY EDKSFTFIIKTPPASFLLKKAAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSL EAAMKIIEGTAKSMGIEVVD
A cryo-electron microscopic study of ribosome-bound termination factor RF2. Rawat, U.B., Zavialov, A.V., Sengupta, J. et al. Nature (2003) 421:87-90. DOI 10.1038/nature01224 · PubMed
Other PDB entries of the same protein (UniProt Q5SHN3 (AlphaFold model), which also has an AlphaFold model), best resolution first:
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