2CLY: ATP synthase B chain, mitochondrial
Subcomplex of the stator of bovine mitochondrial ATP synthase. Determined by X-ray diffraction at 2.8 Å resolution. Released 28 Jun 2006.
- Method
- X-ray diffraction
- Resolution
- 2.8 Å
- Organism
- BOS TAURUS
- Chains
- 6
- Atoms
- 4,845
- Mol. weight
- 104.82 kDa
- Released
- 28 Jun 2006
Explore 2CLY in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
2CLY contains 29 α-helices and 0 β-strands across 6 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain A: 3 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 80-117 | 38 | |
| α-helix | 119-121 | 3 | |
| α-helix | 122-181 | 60 | |
Chain B: 9 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-16 | 5 | |
| α-helix | 21-23 | 3 | |
| α-helix | 24-43 | 20 | |
| α-helix | 53-58 | 6 | |
| α-helix | 65-73 | 9 | |
| α-helix | 78-82 | 5 | |
| α-helix | 88-95 | 8 | |
| α-helix | 96-103 | 8 | |
| α-helix | 104-121 | 18 | |
Chain C: 5 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 7-9 | 3 | |
| α-helix | 10-23 | 14 | |
| α-helix | 35-51 | 17 | |
| α-helix | 59-61 | 3 | |
| α-helix | 64-67 | 4 | |
Chain D: 2 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 81-118 | 38 | |
| α-helix | 121-181 | 61 | |
Chain E: 7 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-16 | 5 | |
| α-helix | 21-23 | 3 | |
| α-helix | 24-43 | 20 | |
| α-helix | 53-59 | 7 | |
| α-helix | 65-75 | 11 | |
| α-helix | 78-82 | 5 | |
| α-helix | 88-121 | 34 | |
Chain F: 3 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 10-23 | 14 | |
| α-helix | 35-51 | 17 | |
| α-helix | 65-67 | 3 | |
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| ATP synthase B chain, mitochondrial | A, D | protein | 214 | BOS TAURUS | P13619 (AlphaFold model) |
| ATP synthase D chain, mitochondrial | B, E | protein | 160 | BOS TAURUS | P13620 (AlphaFold model) |
| ATP synthase coupling factor 6, mitochondrial | C, F | protein | 77 | BOS TAURUS | P02721 (AlphaFold model) |
Sequence of entity 1 (A, D), FASTA
>2CLY_1 ATP SYNTHASE B CHAIN, MITOCHONDRIAL (chains A, D)
PVPPLPEHGGKVRFGLIPEEFFQFLYPKTGVTGPYVLGTGLILYLLSKEIYVITPETFSA
ISTIGFLVYIVKKYGASVGEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQK
RHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQEHMINWVEKR
VVQSISAQQEKETIAKCIADLKLLSKKAQAQPVM
Sequence of entity 2 (B, E), FASTA
>2CLY_2 ATP SYNTHASE D CHAIN, MITOCHONDRIAL (chains B, E)
AGRKLALKTIDWVAFGEIIPRNQKAVANSLKSWNETLTSRLATLPEKPPAIDWAYYKANV
AKAGLVDDFEKKFNALKVPIPEDKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKELEK
MRNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHRPIETL
Sequence of entity 3 (C, F), FASTA
>2CLY_3 ATP SYNTHASE COUPLING FACTOR 6, MITOCHONDRIAL (chains C, F)
FNKELDPVQKLFVDKIREYRTKRQTSGGPVDAGPEYQQDLDRELFKLKQMYGKADMNTFP
NFTFEDPKFEVVEKPQS
Primary citation
On the Structure of the Stator of the Mitochondrial ATP Synthase. Kane Dickson, V., Silvester, J.A., Fearnley, I.M. et al. EMBO J (2006) 25:2911. DOI 10.1038/SJ.EMBOJ.7601177 · PubMed
Other PDB entries of the same protein (UniProt P13619 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 9VPD 2.3 Å, Cryo-EM structure of the IF1 bound bovine ATP synthase monomer: rotary state 1, F1…
- 2WSS 3.2 Å, The structure of the membrane extrinsic region of bovine ATP synthase
- 6YY0 3.23 Å, bovine ATP synthase F1-peripheral stalk domain, state 1
- 6Z1R 3.29 Å, bovine ATP synthase F1-peripheral stalk domain, state 2
- 6ZQM 3.29 Å, bovine ATP synthase monomer state 2 (combined)
- 9W2R 3.4 Å, Cryo-EM structure of FoF1-ATPase monomer state 1 on the bovine heart submitochondrial…
- 6Z1U 3.47 Å, bovine ATP synthase F1c8-peripheral stalk domain, state 3
- 6ZIT 3.49 Å, bovine ATP synthase Stator domain, state 2
- 6ZBB 3.61 Å, bovine ATP synthase Fo domain
- 6ZPO 4.0 Å, bovine ATP synthase monomer state 1 (combined)
- 6ZQN 4.0 Å, bovine ATP synthase monomer state 3 (combined)
- 9W2S 4.0 Å, Cryo-EM structure of FoF1-ATPase monomer state 3 on the bovine heart submitochondrial…
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