Crystal structure of human anti polyhydroxybutyrate antibody Fv. Determined by X-ray diffraction at 1.7 Å resolution. Released 12 Dec 2006.
Explore 2D7T in 3D Show helices and sheets RCSB PDB PDBe
2D7T contains 7 α-helices and 22 β-strands across 2 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
| Element | Residues | Length | Sheet |
|---|---|---|---|
| β-strand | 3-6 | 4 | 1 |
| β-strand | 10-12 | 3 | 2 |
| β-strand | 18-25 | 8 | 1 |
| α-helix | 29-31 | 3 | |
| β-strand | 34-39 | 6 | 2 |
| β-strand | 46-51 | 6 | 2 |
| β-strand | 58-60 | 3 | 2 |
| α-helix | 62-64 | 3 | |
| β-strand | 68-73 | 6 | 1 |
| α-helix | 74-76 | 3 | |
| β-strand | 78-83 | 6 | 1 |
| α-helix | 88-90 | 3 | |
| β-strand | 92-98 | 7 | 2 |
| β-strand | 105-106 | 2 | 2 |
| β-strand | 110-114 | 5 | 2 |
| Element | Residues | Length | Sheet |
|---|---|---|---|
| β-strand | 4-7 | 4 | 3 |
| β-strand | 10-13 | 4 | 4 |
| β-strand | 19-25 | 7 | 3 |
| β-strand | 33-38 | 6 | 4 |
| β-strand | 45-49 | 5 | 4 |
| β-strand | 53-54 | 2 | 4 |
| α-helix | 55 | 1 | |
| β-strand | 62-67 | 6 | 3 |
| β-strand | 70-75 | 6 | 3 |
| α-helix | 80-82 | 3 | |
| β-strand | 84-90 | 7 | 4 |
| α-helix | 96 | 1 | |
| β-strand | 97-98 | 2 | 4 |
| β-strand | 102-106 | 5 | 4 |
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|---|---|---|---|---|
| anti polyhydroxybutyrate antibody Fv, heavy chain | H | protein | 139 | Homo sapiens | Q9UL95 (AlphaFold model) |
| anti polyhydroxybutyrate antibody Fv, light chain | L | protein | 116 | Homo sapiens | Q6GMX0 (AlphaFold model) |
>2D7T_1 anti polyhydroxybutyrate antibody Fv, heavy chain (chains H) QVQLVQSGAEVKKPGASVKVSCKASGYTFTGNYMHWVRQAPGQGLEYMGWINPKSGDTNY AQKFQGRVTMTRDTSISTVYMEVRRLRSDDTAVYYCATGWWGMDVWGQGTLVTVSSASEQ KLISKEDLNGSAGHHHHHH
>2D7T_2 anti polyhydroxybutyrate antibody Fv, light chain (chains L) DIVMTQSPSSLSASVGDRVTITCRASQNINNYLHWYQHEPGKAPKLLIYAASNLQGGVTS RFSGSGSGTDFTLTISTLQPEDFATYYCLQTHAYPLTFGGGTKVDIKRAAHHHHHH
A human antibody fragment with high affinity for the biodegradable polymer film. Watanabe, H., Tsumoto, K., Taguchi, S. et al. To be published.
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