Crystal structure of a cyclized protein fusion of LMO4 LIM domains 1 and 2 with the LIM interacting domain of LDB1. Determined by X-ray diffraction at 1.65 Å resolution. Released 31 Oct 2006.
Explore 2DFY in 3D Show helices and sheets RCSB PDB PDBe
2DFY contains 18 α-helices and 42 β-strands across 2 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
| Element | Residues | Length | Sheet |
|---|---|---|---|
| α-helix | 20-21 | 2 | |
| β-strand | 22 | 1 | 9 |
| β-strand | 23 | 1 | 10 |
| β-strand | 29 | 1 | 9 |
| β-strand | 34-38 | 5 | 10 |
| β-strand | 41-43 | 3 | 10 |
| α-helix | 45-47 | 3 | |
| β-strand | 49 | 1 | 11 |
| β-strand | 56 | 1 | 11 |
| α-helix | 57-60 | 4 | |
| β-strand | 63-67 | 5 | 12 |
| β-strand | 70-72 | 3 | 12 |
| α-helix | 74-81 | 8 | |
| β-strand | 85-86 | 2 | 13 |
| β-strand | 93-94 | 2 | 13 |
| β-strand | 99-103 | 5 | 14 |
| β-strand | 106-109 | 4 | 14 |
| α-helix | 110-112 | 3 | |
| β-strand | 114 | 1 | 15 |
| α-helix | 120 | 1 | |
| β-strand | 121 | 1 | 15 |
| α-helix | 122 | 1 | |
| β-strand | 127-131 | 5 | 16 |
| β-strand | 134-137 | 4 | 16 |
| α-helix | 138-140 | 3 | |
| β-strand | 302-303 | 2 | 16 |
| α-helix | 304-307 | 4 | |
| β-strand | 308-309 | 2 | 14 |
| β-strand | 319-321 | 3 | 12 |
| β-strand | 323-326 | 4 | 10 |
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|---|---|---|---|---|
| fusion protein of LIM domain transcription factor LMO4 and LIM domain-binding protein 1 | C, X | protein | 195 | Mus musculus | P61969 (AlphaFold model) |
>2DFY_1 fusion protein of LIM domain transcription factor LMO4 and LIM domain-binding protein 1 (chains C, X) LSWKRCAGCGGKIADRFLLYAMDSYWHSRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDY IRLFGNSGACSACGQSIPASELVMRAQGNVYHLKCFTCSTCRNRLVPGDRFHYINGSLFC EHDRPTALINGHLNSGGSGGSGGSGGDVMVVGEPTLMGGEFGDEDERLITRLENTQFDAA NGIDDETRESGSIEF
| ID | Name | Formula | Copies |
|---|---|---|---|
| ZN | Zinc ion | Zn | 8 |
Water and common crystallization additives (GOL) are not listed.
Stabilization of a binary protein complex by intein-mediated cyclization. Jeffries, C.M.J., Graham, S.C., Stokes, P.H. et al. Protein Sci (2006) 15:2612-2618. DOI 10.1110/ps.062377006 · PubMed
Other PDB entries of the same protein (UniProt P61969 (AlphaFold model), which also has an AlphaFold model), best resolution first:
MolViewer shows 2DFY directly in your browser with nothing to install. Switch between cartoon, ball-and-stick, spacefill and surface views, color by chain, secondary structure or B-factor, measure distances, angles and dihedrals, and share or embed the view.