Crystal Structure of Quorum-Quenching Antibody 1G9. Determined by X-ray diffraction at 2.85 Å resolution. Released 15 May 2007.
Explore 2OP4 in 3D Show helices and sheets RCSB PDB PDBe
2OP4 contains 12 α-helices and 44 β-strands across 2 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
| Element | Residues | Length | Sheet |
|---|---|---|---|
| β-strand | 3-6 | 4 | 6 |
| β-strand | 9-12 | 4 | 7 |
| β-strand | 18-25 | 8 | 6 |
| α-helix | 29-31 | 3 | |
| β-strand | 34-39 | 6 | 7 |
| β-strand | 45-51 | 7 | 7 |
| β-strand | 57-59 | 3 | 7 |
| α-helix | 61-63 | 3 | |
| β-strand | 67-72 | 6 | 6 |
| β-strand | 77-82 | 6 | 6 |
| α-helix | 84-86 | 3 | |
| β-strand | 88-94 | 7 | 7 |
| β-strand | 102-103 | 2 | 7 |
| β-strand | 107-111 | 5 | 7 |
| β-strand | 117 | 1 | 8 |
| β-strand | 120-124 | 5 | 9 |
| β-strand | 137-147 | 11 | 9 |
| β-strand | 148 | 1 | 8 |
| β-strand | 153-157 | 4 | 10 |
| β-strand | 166 | 1 | 10 |
| β-strand | 171-173 | 3 | 9 |
| α-helix | 174-176 | 3 | |
| β-strand | 177-181 | 3 | 9 |
| β-strand | 184-194 | 11 | 9 |
| α-helix | 198-202 | 4 | |
| β-strand | 206-212 | 6 | 10 |
| β-strand | 217-222 | 6 | 10 |
| Element | Residues | Length | Sheet |
|---|---|---|---|
| α-helix | 2-3 | 2 | |
| β-strand | 4-6 | 3 | 1 |
| β-strand | 9-13 | 4 | 2 |
| β-strand | 18-25 | 8 | 1 |
| α-helix | 29-31 | 3 | |
| β-strand | 34-39 | 6 | 2 |
| β-strand | 43-49 | 7 | 2 |
| β-strand | 53-54 | 2 | 2 |
| α-helix | 55 | 1 | |
| β-strand | 62-67 | 6 | 1 |
| β-strand | 70-76 | 7 | 1 |
| α-helix | 80-82 | 3 | |
| β-strand | 84-92 | 9 | 2 |
| β-strand | 95-98 | 4 | 2 |
| β-strand | 102-106 | 5 | 2 |
| β-strand | 111 | 1 | 3 |
| β-strand | 114-118 | 5 | 4 |
| α-helix | 122-126 | 5 | |
| β-strand | 129-139 | 11 | 4 |
| β-strand | 140 | 1 | 3 |
| β-strand | 145-150 | 6 | 5 |
| β-strand | 153-154 | 2 | 5 |
| β-strand | 159-161 | 3 | 4 |
| α-helix | 162-164 | 3 | |
| β-strand | 165-166 | 2 | 4 |
| β-strand | 173-182 | 10 | 4 |
| α-helix | 183-186 | 4 | |
| β-strand | 191-197 | 7 | 5 |
| β-strand | 204-210 | 7 | 5 |
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|---|---|---|---|---|
| Murine Antibody Fab RS2-1G9 Lambda Light Chain | L | protein | 212 | Mus musculus | G0YP42 (AlphaFold model) |
| Murine Antibody Fab RS2-1G9 IGG1 Heavy Chain | H | protein | 222 | Mus musculus | P01868 (AlphaFold model) |
>2OP4_1 Murine Antibody Fab RS2-1G9 Lambda Light Chain (chains L) QAVVTQESALTTSPGETVTLTCRSSTGAVTTRNYANWVQEKPDHFFTGLIGDTNNRAPGV PARFSGSLIGHKAALTITGAQTEDESVYFCALWYSNHWVFGGGTKLTVLGQPKSSPSVTL FPPSSEELETNKATLVCTITDFYPGVVTVDWKVDGTPVTQGMETTQPSKQSNNKYMASSY LTLTAGAWERHSSYSCQVTHEGHTVEKSLSRA
>2OP4_2 Murine Antibody Fab RS2-1G9 IGG1 Heavy Chain (chains H) QVQLQQSGSELVRPGASVKLSCKASGYTFTTYWIHWVKQRPGQGLEWIGTIYPGSDNTYY DEKFKNKATLTVDTSSSTAFMQLSSLTSEDSAVYFCTRGSLYYNNYGWFGYWGQGTLVTV SAAKTTPPSVYPLAPGSNAASQSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQ SDLYTLTSSVTVPSSTWPSQTVTCNVAHPASSTKVDKKIVPR
Crystal Structures of a Quorum-quenching Antibody. Debler, E.W., Kaufmann, G.F., Kirchdoerfer, R.N. et al. J Mol Biol (2007) 368:1392-1402. DOI 10.1016/j.jmb.2007.02.081 · PubMed
Other PDB entries of the same protein (UniProt G0YP42 (AlphaFold model), which also has an AlphaFold model), best resolution first:
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