3N8Y: Aspirin Acetylated Cyclooxygenase-1

Structure of Aspirin Acetylated Cyclooxygenase-1 in Complex with Diclofenac. Determined by X-ray diffraction at 2.6 Å resolution. Released 28 Jul 2010.

Method
X-ray diffraction
Resolution
2.6 Å
Organism
Ovis aries
Chains
2
Atoms
9,465
Mol. weight
134.2 kDa
Ligands
BOG, DIF, HEM, SAL
Released
28 Jul 2010

Explore 3N8Y in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

3N8Y contains 81 α-helices and 60 β-strands across 2 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 41 helices, 30 β-strands

ElementResiduesLengthSheet
α-helix35-384
β-strand46-5051
β-strand54-5851
β-strand64-6522
β-strand71-7222
α-helix731
α-helix74-829
α-helix83-853
α-helix86-938
α-helix97-1048
α-helix108-12114
β-strand13013
α-helix139-1435
β-strand14714
β-strand14915
β-strand15013
α-helix153-1564
β-strand16116
β-strand16416
α-helix174-1818
β-strand18317
β-strand18918
β-strand19419
β-strand195110
α-helix196-20611
β-strand212111
β-strand22014
β-strand221111
α-helix238-2447
β-strand245112
α-helix2511
β-strand252112
α-helix2531
β-strand255-257313
β-strand260-262313
α-helix263-2642
β-strand265114
β-strand285114
α-helix290-2945
α-helix296-31924
α-helix325-34319
α-helix344-3485
α-helix349-3535
α-helix363-3664
β-strand37815
α-helix379-3846
α-helix388-3903
β-strand395-397315
β-strand400-402315
α-helix404-4074
α-helix413-4175
α-helix419-42810
β-strand430110
α-helix4311
β-strand43218
α-helix4331
β-strand44017
α-helix445-45814
α-helix460-4623
α-helix463-4697
α-helix473-4753
α-helix478-4825
α-helix486-49510
α-helix498-5003
α-helix503-5086
α-helix520-53415
α-helix538-5403
α-helix548-5503
α-helix552-5609
α-helix564-5696
β-strand58119
Chain B: 40 helices, 30 β-strands
ElementResiduesLengthSheet
α-helix35-384
β-strand46-50516
β-strand54-58516
β-strand64-65217
β-strand71-72217
α-helix74-818
α-helix83-853
α-helix86-938
α-helix97-1048
α-helix108-12114
β-strand130118
α-helix139-1435
β-strand147119
β-strand149120
β-strand150118
α-helix153-1564
β-strand161121
β-strand164121
α-helix171-1733
α-helix174-1818
β-strand183122
β-strand189123
β-strand194124
β-strand195125
α-helix196-20611
β-strand212126
β-strand220119
β-strand221126
α-helix238-2447
β-strand245127
α-helix2511
β-strand252127
α-helix2531
β-strand255-257328
β-strand260-262328
α-helix263-2642
β-strand265129
α-helix281-2833
β-strand285129
α-helix292-2943
α-helix296-31924
α-helix325-34319
α-helix344-3485
α-helix349-3535
α-helix363-3664
β-strand378120
α-helix379-3846
α-helix388-3903
β-strand395-397330
β-strand400-402330
α-helix404-4074
α-helix413-42816
β-strand430125
β-strand432123
β-strand440122
α-helix445-45814
α-helix460-4623
α-helix463-4697
α-helix473-4753
α-helix478-4825
α-helix486-49510
α-helix498-5003
α-helix503-5075
α-helix520-53516
α-helix538-5403
α-helix548-5503
α-helix553-5608
α-helix564-5685
α-helix569-5713
β-strand581124

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Prostaglandin G/H synthase 1Aprotein553Ovis ariesP05979 (AlphaFold model)
Prostaglandin G/H synthase 1Bprotein553Ovis ariesP05979 (AlphaFold model)
Sequence of entity 1 (A), FASTA
>3N8Y_1 Prostaglandin G/H synthase 1 (chains A)
PVNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEIWTWLRTTLRPSPSFIHF
LLTHGRWLWDFVNATFIRDTLMRLVLTVRSNLIPSPPTYNIAHDYISWESFSNVSYYTRI
LPSVPRDCPTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTHQFFK
TSGKMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPV
LMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQT
ARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLFGAQFQYRNRIAMEFNQLYHWHPLM
PDSFRVGPQDYSYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHILHVAVDV
IKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAAELEELYGDIDALEFYPGLLLEK
CHPNSIFGESMIEMGAPFSLKGLLGNPICSPEYWKASTFGGEVGFNLVKTATLKKLVCLN
TKTCPYVSFHVPD
Sequence of entity 2 (B), FASTA
>3N8Y_2 Prostaglandin G/H synthase 1 (chains B)
PVNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCTIPEIWTWLRTTLRPSPSFIHF
LLTHGRWLWDFVNATFIRDTLMRLVLTVRSNLIPSPPTYNIAHDYISWESFSNVSYYTRI
LPSVPRDCPTPMGTKGKKQLPDAEFLSRRFLLRRKFIPDPQGTNLMFAFFAQHFTHQFFK
TSGKMGPGFTKALGHGVDLGHIYGDNLERQYQLRLFKDGKLKYQMLNGEVYPPSVEEAPV
LMHYPRGIPPQSQMAVGQEVFGLLPGLMLYATIWLREHNRVCDLLKAEHPTWGDEQLFQT
ARLILIGETIKIVIEEYVQQLSGYFLQLKFDPELLFGAQFQYRNRIAMEFNQLYHWHPLM
PDSFRVGPQDYSYEQFLFNTSMLVDYGVEALVDAFSRQPAGRIGGGRNIDHHILHVAVDV
IKESRVLRLQPFNEYRKRFGMKPYTSFQELTGEKEMAAELEELYGDIDALEFYPGLLLEK
CHPNSIFGESMIEMGAPFSLKGLLGNPICSPEYWKASTFGGEVGFNLVKTATLKKLVCLN
TKTCPYVSFHVPD

Ligands and cofactors

IDNameFormulaCopies
BOGoctyl beta-D-glucopyranosideC14 H28 O64
DIF2-[2,6-dichlorophenyl)amino]benzeneacetic acidC14 H11 Cl2 N O22
HEMProtoporphyrin IX containing FEC34 H32 Fe N4 O42
SAL2-hydroxybenzoic acidC7 H6 O31

Primary citation

Comparison of Cyclooxygenase-1 Crystal Structures: Cross-Talk between Monomers Comprising Cyclooxygenase-1 Homodimers. Sidhu, R.S., Lee, J.Y., Yuan, C. et al. Biochemistry (2010) 49:7069-7079. DOI 10.1021/bi1003298 · PubMed

Other PDB entries of the same protein (UniProt P05979 (AlphaFold model), which also has an AlphaFold model), best resolution first:

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