3VHS: UBZ of human WRNIP1

Crystal structure of UBZ of human WRNIP1. Determined by X-ray diffraction at 1.9 Å resolution. Released 10 Oct 2012.

Method: X-ray diffraction
Resolution: 1.9 Å
Organism: Homo sapiens
Chains: 2
Atoms: 423
Mol. weight: 6.66 kDa
Ligands: ZN
Released: 10 Oct 2012

Explore 3VHS in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

3VHS contains 3 α-helices and 4 β-strands across 2 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 2 helices, 2 β-strands

Element	Residues	Length	Sheet
β-strand	17-19	3	1
β-strand	26-28	3	1
α-helix	29-31	3
α-helix	32-39	8

Chain B: 1 helix, 2 β-strands

Element	Residues	Length	Sheet
β-strand	17-19	3	2
β-strand	26-28	3	2
α-helix	29-35	7

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
ATPase WRNIP1	A, B	protein	29	Homo sapiens	Q96S55 (AlphaFold model)

Sequence of entity 1 (A, B), FASTA

>3VHS_1 ATPase WRNIP1 (chains A, B)
GSPEFQVQCPVCQQMMPAAHINSHLDRCL

Ligands and cofactors

ID	Name	Formula	Copies
ZN	Zinc ion	Zn	2

Water and common crystallization additives (NA) are not listed.

Primary citation

A novel mode of ubiquitin recognition by the ubiquitin-binding zinc finger domain of WRNIP1. Suzuki, N., Rohaim, A., Kato, R. et al. FEBS J (2016). DOI 10.1111/febs.13734 · PubMed

Other PDB entries of the same protein (UniProt Q96S55 (AlphaFold model), which also has an AlphaFold model), best resolution first:

3VHT 2.4 Å, Crystal structure of GFP-Wrnip1 UBZ domain fusion protein in complex with ubiquitin

Browse structure collections

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