4AVX: PDB entry 4AVX

Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) bound to an IP2 compound at 1.68 A Resolution. Determined by X-ray diffraction at 1.68 Å resolution. Released 13 Jun 2012.

Method
X-ray diffraction
Resolution
1.68 Å
Organism
HOMO SAPIENS
Chains
1
Atoms
1,978
Mol. weight
27.02 kDa
Ligands
ZN, ITP
Released
13 Jun 2012

Explore 4AVX in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

4AVX contains 17 α-helices and 8 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 17 helices, 8 β-strands

ElementResiduesLengthSheet
α-helix7-159
α-helix25-3713
α-helix42-5312
α-helix58-7417
α-helix77-837
α-helix86-9813
α-helix102-11817
α-helix123-1253
α-helix126-13712
α-helix140-1456
α-helix147-1504
α-helix156-1627
β-strand16511
α-helix1711
β-strand17211
α-helix1731
β-strand17412
β-strand17712
β-strand180-18123
β-strand188-18923
α-helix191-1933
β-strand196-20054
α-helix201-2033
β-strand205-21174
α-helix213-2219

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Hepatocyte growth factor-regulated tyrosine kinase substrateAprotein226HOMO SAPIENSO14964 (AlphaFold model)
Sequence of entity 1 (A), FASTA
>4AVX_1 HEPATOCYTE GROWTH FACTOR-REGULATED TYROSINE KINASE SUBSTRATE (chains A)
SMGRGSGTFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPH
VALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAF
RNEPKYKVVQDTYQIMKVEGHVFPEFKESDAMFAAERAPDWVDAEECHRCRVQFGVMTRK
HHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRKAEG

Ligands and cofactors

IDNameFormulaCopies
ZNZinc ionZn2
ITPPhosphoric acid mono-(2,3,4,6-tetrahydroxy-5-phosphonooxy-cyclohexyl) esterC6 H14 O12 P21

Water and common crystallization additives (EDO) are not listed.

Primary citation

Crystal Structure of the Tandem Vhs and Fyve Domains of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) Bound to an Ip2 Compound at 1.68 A Resolution. Williams, E., Canning, P., Shrestha, L. et al. To be published.

Other PDB entries of the same protein (UniProt O14964 (AlphaFold model), which also has an AlphaFold model), best resolution first:

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