Crystal structure of the ribosome at 5.5 A resolution. Determined by X-ray diffraction at 5.5 Å resolution. Released 9 Jul 2014.
Explore 4V42 in 3D Show helices and sheets RCSB PDB PDBe
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|---|---|---|---|---|
| 30S 16S ribosomal RNA | AA | RNA | 1522 | Thermus thermophilus | |
| Trna(phe) | AB, AC | RNA | 76 | ||
| Trna(phe) | AD | RNA | 74 | ||
| A- and P-site messenger RNA codons | A1 | RNA | 6 | ||
| 30S ribosomal protein S2 | AE | protein | 256 | Thermus thermophilus | P80371 (AlphaFold model) |
| 30S ribosomal protein S3 | AF | protein | 239 | Thermus thermophilus | P80372 (AlphaFold model) |
| 30S ribosomal protein S4 | AG | protein | 209 | Thermus thermophilus | P80373 (AlphaFold model) |
| 30S ribosomal protein S5 | AH | protein | 162 | Thermus thermophilus | Q5SHQ5 (AlphaFold model) |
| 30S ribosomal protein S6 | AI | protein | 101 | Thermus thermophilus | Q5SLP8 |
| 30S ribosomal protein S7 | AJ | protein | 156 | Thermus thermophilus | P17291 |
| 30S ribosomal protein S8 | AK | protein | 138 | Thermus thermophilus | P0DOY9 |
| 30S ribosomal protein S9 | AL | protein | 128 | Thermus thermophilus | P80374 |
35 more molecules are not listed.
>4V42_1 30S 16S RIBOSOMAL RNA (chains AA) UUUGUUGGAGAGUUUGAUCCUGGCUCAGGGUGAACGCUGGCGGCGUGCCUAAGACAUGCA AGUCGUGCGGGCCGCGGGGUUUUACUCCGUGGUCAGCGGCGGACGGGUGAGUAACGCGUG GGUGACCUACCCGGAAGAGGGGGACAACCCGGGGAAACUCGGGCUAAUCCCCCAUGUGGA CCCGCCCCUUGGGGUGUGUCCAAAGGGCUUUGCCCGCUUCCGGAUGGGCCCGCGUCCCAU CAGCUAGUUGGUGGGGUAAUGGCCCACCAAGGCGACGACGGGUAGCCGGUCUGAGAGGAU GGCCGGCCACAGGGGCACUGAGACACGGGCCCCACUCCUACGGGAGGCAGCAGUUAGGAA UCUUCCGCAAUGGGCGCAAGCCUGACGGAGCGACGCCGCUUGGAGGAAGAAGCCCUUCGG GGUGUAAACUCCUGAACCCGGGACGAAACCCCCGACGAGGGGACUGACGGUACCGGGGUA AUAGCGCCGGCCAACUCCGUGCCAGCAGCCGCGGUAAUACGGAGGGCGCGAGCGUUACCC GGAUUCACUGGGCGUAAAGGGCGUGUAGGCGGCCUGGGGCGUCCCAUGUGAAAGACCACG GCUCAACCGUGGGGGAGCGUGGGAUACGCUCAGGCUAGACGGUGGGAGAGGGUGGUGGAA UUCCCGGAGUAGCGGUGAAAUGCGCAGAUACCGGGAGGAACGCCGAUGGCGAAGGCAGCC ACCUGGUCCACCCGUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACCGGAUUAGAUACC CGGGUAGUCCACGCCCUAAACGAUGCGCGCUAGGUCUCUGGGUCUCCUGGGGGCCGAAGC UAACGCGUUAAGCGCGCCGCCUGGGGAGUACGGCCGCAAGGCUGAAACUCAAAGGAAUUG ACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUU ACCAGGCCUUGACAUGCUAGGGAACCCGGGUGAAAGCCUGGGGUGCCCCGCGAGGGGAGC CCUAGCACAGGUGCUGCAUGGCCGUCGUCAGCUCGUGCCGUGAGGUGUUGGGUUAAGUCC CGCAACGAGCGCAACCCCCGCCGUUAGUUGCCAGCGGUUCGGCCGGGCACUCUAACGGGA CUGCCCGCGAAAGCGGGAGGAAGGAGGGGACGACGUCUGGUCAGCAUGGCCCUUACGGCC UGGGCGACACACGUGCUACAAUGCCCACUACAAAGCGAUGCCACCCGGCAACGGGGAGCU AAUCGCAAAAAGGUGGGCCCAGUUCGGAUUGGGGUCUGCAACCCGACCCCAUGAAGCCGG AAUCGCUAGUAAUCGCGGAUCAGCCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACAC ACCGCCCGUCACGCCAUGGGAGCGGGCUCUACCCGAAGUCGCCGGGAGCCUACGGGCAGG CGCCGAGGGUAGGGCCCGUGACUGGGGCGAAGUCGUAACAAGGUAGCUGUACCGGAAGGU GCGGCUGGAUCACCUCCUUUCU
>4V42_2 TRNA(PHE) (chains AB, AC) GCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUC CACAGAAUUCGCACCA
>4V42_3 TRNA(PHE) (chains AD) UCCGUGAUAACAAAGCGGUUAUGUACCGGAUUUUUAUUCCGGCUAUCGGGGUUCAAUUCC CCGUCGCGGAGCCA
>4V42_4 A- AND P-SITE MESSENGER RNA CODONS (chains A1) UUUUUU
>4V42_5 30S RIBOSOMAL PROTEIN S2 (chains AE) MPVEITVKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIED LAMRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEA LFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKL FIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQ EAEATETPEGESEVEA
>4V42_6 30S RIBOSOMAL PROTEIN S3 (chains AF) MGNKIHPIGFRLGITRDWESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERA ADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTGKNVALNVQEVQNPNLSAPLVAQRV AEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEWAAQGRVPLHTLRA NIDYGFALARTTYGVLGVKAYIFLGEVIGGQKPKARPELPKAEERPRRRRPAVRVKKEE
>4V42_7 30S RIBOSOMAL PROTEIN S4 (chains AG) MGRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLRE KQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQL VRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEG MKGKFLRLPDREDLALPVQENLVIEFYSR
>4V42_8 30S RIBOSOMAL PROTEIN S5 (chains AH) MPETDFEEKMILIRRTARMQAGGRRFRFGALVVVGDRQGRVGLGFGKAPEVPLAVQKAGY YARRNMVEVPLQNGTIPHEIEVEFGASKIVLKPAAPGTGVIAGAVPRAILELAGVTDILT KELGSRNPINIAYATMEALRQLRTKADVERLRKGEAHAQAQG
>4V42_9 30S RIBOSOMAL PROTEIN S6 (chains AI) MRRYEVNIVLNPNLDQSQLALEKEIIQRALENYGARVEKVEELGLRRLAYPIAKDPQGYF LWYQVEMPEDRVNDLARELRIRDNVRRVMVVKSQEPFLANA
>4V42_10 30S RIBOSOMAL PROTEIN S7 (chains AJ) MARRRRAEVRQLQPDLVYGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLK VFKQAVENVKPRMEVRSRRVGGANYQVPMEVSPRRQQSLALRWLVQAANQRPERRAAVRI AHELMDAAEGKGGAVKKKEDVERMAEANRAYAHYRW
>4V42_11 30S RIBOSOMAL PROTEIN S8 (chains AK) MLTDPIADMLTRIRNATRVYKESTDVPASRFKEEILRILAREGFIKGYERVDVDGKPYLR VYLKYGPRRQGPDPRPEQVIHHIRRISKPGRRVYVGVKEIPRVRRGLGIAILSTSKGVLT DREARKLGVGGELICEVW
>4V42_12 30S RIBOSOMAL PROTEIN S9 (chains AL) MEQYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFD AYITVRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKAR RAPQYSKR
Crystal structure of the ribosome at 5.5 A resolution. Yusupov, M.M., Yusupova, G.Z., Baucom, A. et al. Science (2001) 292:883-896. DOI 10.1126/science.1060089 · PubMed
Other PDB entries of the same protein (UniProt P80371 (AlphaFold model), which also has an AlphaFold model), best resolution first:
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