5APO: Yeast 60S ribosomal subunit
Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1. Determined by electron microscopy at 3.41 Å resolution. Released 16 Dec 2015.
- Method
- Electron microscopy
- Resolution
- 3.41 Å
- Organisms
- Saccharomyces cerevisiae S288c, Saccharomyces cerevisiae S288C
- Chains
- 47
- Atoms
- 129,383
- Mol. weight
- 2087.01 kDa
- Ligands
- ZN, MG
- Released
- 16 Dec 2015
Explore 5APO in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
5APO contains 340 α-helices and 326 β-strands across 44 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain a: 5 helices, 7 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 8-11 | 4 | |
| α-helix | 42-47 | 6 | |
| β-strand | 72-74 | 3 | 5 |
| α-helix | 84-93 | 10 | |
| β-strand | 99-100 | 2 | 59 |
| β-strand | 101-103 | 3 | 6 |
| α-helix | 105-107 | 3 | |
| β-strand | 111-113 | 3 | 5 |
| β-strand | 124-127 | 4 | 6 |
| β-strand | 130 | 1 | 5 |
| α-helix | 132-139 | 8 | |
| β-strand | 145-147 | 3 | 6 |
Chain A: 12 helices, 16 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 6-9 | 4 | |
| α-helix | 10-12 | 3 | |
| α-helix | 14-16 | 3 | |
| β-strand | 18 | 1 | 7 |
| α-helix | 26-27 | 2 | |
| α-helix | 30-32 | 3 | |
| α-helix | 34-38 | 5 | |
| β-strand | 40-49 | 10 | 8 |
| β-strand | 58-64 | 7 | 8 |
| β-strand | 71-77 | 7 | 8 |
| α-helix | 78 | 1 | |
| β-strand | 83 | 1 | 9 |
| α-helix | 86 | 1 | |
| β-strand | 87-91 | 5 | 8 |
| β-strand | 101-103 | 3 | 8 |
| α-helix | 104-106 | 3 | |
| β-strand | 111-114 | 4 | 8 |
| β-strand | 116 | 1 | 10 |
| β-strand | 126 | 1 | 10 |
| β-strand | 134-140 | 7 | 8 |
| α-helix | 142-144 | 3 | |
| β-strand | 145-149 | 5 | 8 |
| β-strand | 155-159 | 5 | 8 |
| β-strand | 163-166 | 4 | 8 |
| β-strand | 171 | 1 | 11 |
| α-helix | 174-176 | 3 | |
| α-helix | 182-190 | 9 | |
| β-strand | 193 | 1 | 7 |
Chain b: 3 helices, 1 β-strand
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-16 | 5 | |
| β-strand | 22 | 1 | 92 |
| α-helix | 23-26 | 4 | |
| α-helix | 40-55 | 16 | |
Chain B: 14 helices, 19 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 9-10 | 2 | |
| α-helix | 27-28 | 2 | |
| α-helix | 33-35 | 3 | |
| β-strand | 43 | 1 | 12 |
| β-strand | 45-59 | 15 | 13 |
| β-strand | 71-80 | 10 | 13 |
| β-strand | 84-93 | 10 | 14 |
| β-strand | 100-106 | 7 | 14 |
| α-helix | 112-117 | 6 | |
| α-helix | 134-137 | 4 | |
| α-helix | 142-153 | 12 | |
| β-strand | 157-163 | 7 | 14 |
| α-helix | 176-177 | 2 | |
| β-strand | 178-182 | 5 | 14 |
| β-strand | 183 | 1 | 12 |
| α-helix | 188-197 | 10 | |
| β-strand | 199 | 1 | 14 |
| β-strand | 202-203 | 2 | 14 |
| α-helix | 205-207 | 3 | |
| β-strand | 214-220 | 7 | 13 |
| α-helix | 221-223 | 3 | |
| β-strand | 226-227 | 2 | 15 |
| α-helix | 229-233 | 5 | |
| α-helix | 235-239 | 5 | |
| β-strand | 268-269 | 2 | 15 |
| β-strand | 274-285 | 12 | 13 |
| α-helix | 307 | 1 | |
| β-strand | 311 | 1 | 16 |
| β-strand | 315 | 1 | 16 |
| β-strand | 321-325 | 5 | 13 |
| β-strand | 335-340 | 6 | 13 |
| β-strand | 356-359 | 4 | 13 |
| α-helix | 373-380 | 8 | |
Chain c: 4 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 11-20 | 10 | |
| β-strand | 22-25 | 4 | 17 |
| α-helix | 27-35 | 9 | |
| β-strand | 41-44 | 4 | 17 |
| α-helix | 50-63 | 14 | |
| β-strand | 66-69 | 4 | 17 |
| α-helix | 74-80 | 7 | |
| β-strand | 89-94 | 6 | 17 |
Chain C: 22 helices, 14 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 6-7 | 2 | 18 |
| β-strand | 8-9 | 2 | 19 |
| β-strand | 10 | 1 | 20 |
| β-strand | 13 | 1 | 20 |
| β-strand | 19-20 | 2 | 18 |
| α-helix | 24-27 | 4 | |
| α-helix | 32-42 | 11 | |
| β-strand | 63 | 1 | 21 |
| β-strand | 76 | 1 | 21 |
| β-strand | 88 | 1 | 21 |
| α-helix | 98-99 | 2 | |
| α-helix | 117-128 | 12 | |
| α-helix | 132-136 | 5 | |
| β-strand | 150-152 | 3 | 19 |
| α-helix | 154-157 | 4 | |
| α-helix | 162-169 | 8 | |
| α-helix | 170-174 | 5 | |
| α-helix | 175-182 | 8 | |
| β-strand | 186-187 | 2 | 22 |
| α-helix | 192-195 | 4 | |
| β-strand | 199-200 | 2 | 22 |
| β-strand | 206-209 | 4 | 19 |
| α-helix | 215-220 | 6 | |
| β-strand | 226-229 | 4 | 19 |
| α-helix | 235-238 | 4 | |
| α-helix | 240-242 | 3 | |
| β-strand | 248-251 | 4 | 19 |
| α-helix | 252-256 | 5 | |
| α-helix | 258-261 | 4 | |
| α-helix | 276-279 | 4 | |
| α-helix | 286-290 | 5 | |
| α-helix | 293-296 | 4 | |
| α-helix | 307-309 | 3 | |
| α-helix | 321-326 | 6 | |
| α-helix | 331-336 | 6 | |
| α-helix | 353-360 | 8 | |
Chain d: 5 helices, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 9-15 | 7 | 23 |
| α-helix | 16-19 | 4 | |
| α-helix | 25-27 | 3 | |
| α-helix | 28-42 | 15 | |
| β-strand | 49-51 | 3 | 23 |
| α-helix | 53-60 | 8 | |
| β-strand | 70-79 | 10 | 23 |
| β-strand | 89-95 | 7 | 23 |
| β-strand | 107-108 | 2 | 23 |
| α-helix | 109-110 | 2 | |
Chain D: 20 helices, 8 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 7-9 | 3 | |
| α-helix | 10-14 | 5 | |
| α-helix | 18-20 | 3 | |
| α-helix | 21-24 | 4 | |
| α-helix | 30-37 | 8 | |
| α-helix | 41-43 | 3 | |
| α-helix | 46-48 | 3 | |
| β-strand | 50-55 | 6 | 24 |
| β-strand | 60-68 | 9 | 24 |
| β-strand | 71-79 | 9 | 24 |
| α-helix | 80-86 | 7 | |
| α-helix | 95-113 | 19 | |
| α-helix | 127-129 | 3 | |
| α-helix | 134-135 | 2 | |
| α-helix | 139-141 | 3 | |
| β-strand | 142-143 | 2 | 25 |
| β-strand | 145-147 | 3 | 24 |
| α-helix | 159-167 | 9 | |
| β-strand | 171-172 | 2 | 25 |
| β-strand | 183-184 | 2 | 26 |
| β-strand | 189-190 | 2 | 26 |
| α-helix | 192-199 | 8 | |
| α-helix | 202-214 | 13 | |
| α-helix | 216-222 | 7 | |
| α-helix | 224-228 | 5 | |
| α-helix | 235-249 | 15 | |
| α-helix | 262-269 | 8 | |
| α-helix | 279-293 | 15 | |
36 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| 25S ribosomal RNA | 5 | RNA | 3396 | Saccharomyces cerevisiae S288c | |
| 5S ribosomal RNA | 7 | RNA | 121 | Saccharomyces cerevisiae S288c | |
| 5.8S ribosomal RNA | 8 | RNA | 158 | Saccharomyces cerevisiae S288c | |
| 60S ribosomal protein L2-A | A | protein | 254 | Saccharomyces cerevisiae S288c | P0CX45 (AlphaFold model) |
| 60S ribosomal protein L3 | B | protein | 387 | Saccharomyces cerevisiae S288c | P14126 (AlphaFold model) |
| 60S ribosomal protein L4-A | C | protein | 362 | Saccharomyces cerevisiae S288c | P10664 (AlphaFold model) |
| 60S ribosomal protein L5 | D | protein | 297 | Saccharomyces cerevisiae S288c | P26321 (AlphaFold model) |
| 60S ribosomal protein EL6 | E | protein | 176 | Saccharomyces cerevisiae S288C | |
| 60S ribosomal protein L7-A | F | protein | 244 | Saccharomyces cerevisiae S288c | P05737 |
| 60S ribosomal protein L8-A | G | protein | 256 | Saccharomyces cerevisiae S288c | P17076 |
| 60S ribosomal protein L9-A | H | protein | 191 | Saccharomyces cerevisiae S288c | P05738 |
| 60S ribosomal protein L10 | I | protein | 221 | Saccharomyces cerevisiae S288c | P41805 |
35 more molecules are not listed.
Sequence of entity 1 (5), FASTA
>5APO_1 25S ribosomal RNA (chains 5)
GUUUGACCUCAAAUCAGGUAGGAGUACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGA
AAAGAAACCAACCGGGAUUGCCUUAGUAACGGCGAGUGAAGCGGCAAAAGCUCAAAUUUG
AAAUCUGGUACCUUCGGUGCCCGAGUUGUAAUUUGGAGAGGGCAACUUUGGGGCCGUUCC
UUGUCUAUGUUCCUUGGAACAGGACGUCAUAGAGGGUGAGAAUCCCGUGUGGCGAGGAGU
GCGGUUCUUUGUAAAGUGCCUUCGAAGAGUCGAGUUGUUUGGGAAUGCAGCUCUAAGUGG
GUGGUAAAUUCCAUCUAAAGCUAAAUAUUGGCGAGAGACCGAUAGCGAACAAGUACAGUG
AUGGAAAGAUGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUACGUGAAAUUGUUGAAAGG
GAAGGGCAUUUGAUCAGACAUGGUGUUUUGUGCCCUCUGCUCCUUGUGGGUAGGGGAAUC
UCGCAUUUCACUGGGCCAGCAUCAGUUUUGGUGGCAGGAUAAAUCCAUAGGAAUGUAGCU
UGCCUCGGUAAGUAUUAUAGCCUGUGGGAAUACUGCCAGCUGGGACUGAGGACUGCGACG
UAAGUCAAGGAUGCUGGCAUAAUGGUUAUAUGCCGCCCGUCUUGAAACACGGACCAAGGA
GUCUAACGUCUAUGCGAGUGUUUGGGUGUAAAACCCAUACGCGUAAUGAAAGUGAACGUA
GGUUGGGGCCUCGCAAGAGGUGCACAAUCGACCGAUCCUGAUGUCUUCGGAUGGAUUUGA
GUAAGAGCAUAGCUGUUGGGACCCGAAAGAUGGUGAACUAUGCCUGAAUAGGGUGAAGCC
AGAGGAAACUCUGGUGGAGGCUCGUAGCGGUUCUGACGUGCAAAUCGAUCGUCGAAUUUG
GGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCU
CAGGAUAGCAGAAGCUCGUAUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGAGGUUCCGGG
GUCGAAAUGACCUUGACCUAUUCUCAAACUUUAAAUAUGUAAGAAGUCCUUGUUACUUAA
UUGAACGUGGACAUUUGAAUGAAGAGCUUUUAGUGGGCCAUUUUUGGUAAGCAGAACUGG
CGAUGCGGGAUGAACCGAACGUAGAGUUAAGGUGCCGGAAUACACGCUCAUCAGACACCA
CAAAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAA
GGAGUGUGUAACAACUCACCGGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCUCAAGC
GUGUUACCUAUACUCUACCGUCAGGGUUGAUAUGAUGCCCUGACGAGUAGGCAGGCGUGG
AGGUCAGUGACGAAGCCUAGACCGUAAGGUCGGGUCGAACGGCCUCUAGUGCAGAUCUUG
GUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAAGUGGGGAAAGGUUCCACG
UCAACAGCAGUUGGACGUGGGUUAGUCGAUCCUAAGAGAUGGGGAAGCUCCGUUUCAAAG
GCCUGAUUUUAUGCAGGCCACCAUCGAAAGGGAAUCCGGUUAAGAUUCCGGAACCUGGAU
AUGGAUUCUUCACGGUAACGUAACUGAAUGUGGAGACGUCGGCGCGAGCCCUGGGAGGAG
UUAUCUUUUCUUCUUAACAGCUUAUCACCCCGGAAUUGGUUUAUCCGGAGAUGGGGUCUU
AUGGCUGGAAGAGGCCAGCACCUUUGCUGGCUCCGGUGCGCUUGUGACGGCCCGUGAAAA
UCCACAGGAAGGAAUAGUUUUCAUGCCAGGUCGUACUGAUAACCGCAGCAGGUCUCCAAG
GUGAACAGCCUCUAGUUGAUAGAAUAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGU
AACUUCGGGAUAAGGAUUGGCUCUAAGGGUCGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGAUCAA
CUUAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUG
GUCAGAAAGUGAUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAA
GAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAA
AUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCU
AUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAG
AAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAU
AAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUUCUUUACUUAUUCAA
UGAAGCGGAGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAGGUCCCAUUCGGGGCUGA
UCCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAACGA
UAACGCAGAUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGG
UAAAAGCCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUC
GAUCCUUUAGUCCCUCGGAAUUUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAA
CUGGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAUGUCGGCU
CUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGA
ACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAAUGUUA
CCGCAAUAGUAAUUGAACUUAGUACGAGAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGC
GGCUGUCUGAUCAGGCAUUGCCGCGAAGCUACCAUCCGCUGGAUUAUGGCUGAACGCCUC
UAAGUCAGAAUCCAUGCUAGAACGCGGUGAUUUCUUUGCUCCACACAAUAUAGAUGGAUA
CGAAUAAGGCGUCCUUGUGGCGUCGCUGAACCAUAGCAGGCUAGCAACGGUGCACUUGGC
GGAAAGGCCUUGGGUGCUUGCUGGCGAAUUGCAAUGUCAUUUUGCGUGGGGAUAAAUCAU
UUGUAUACGACUUAGAUGUACAACGGGGUAUUGUAAGCAGUAGAGUAGCCUUGUUGUUAC
GAUCUGCUGAGAUUAAGCCUUUGUUGUCUGAUUUGU
Sequence of entity 2 (7), FASTA
>5APO_2 5S ribosomal RNA (chains 7)
GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUG
GUAAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUC
U
Sequence of entity 3 (8), FASTA
>5APO_3 5.8S ribosomal RNA (chains 8)
AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAU
ACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCC
UUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU
Sequence of entity 4 (A), FASTA
>5APO_4 60S ribosomal protein L2-A (chains A)
MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAK
VVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKP
GDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLL
KAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAA
RRTGLLRGSQKTQD
Sequence of entity 5 (B), FASTA
>5APO_5 60S ribosomal protein L3 (chains B)
MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDL
DRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK
NWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVHTQIRKTPLAQKKAHLAE
IQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPR
KTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEANGATSFDR
TKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWID
TASKFGKGRFQTPAEKHAFMGTLKKDL
Sequence of entity 6 (C), FASTA
>5APO_6 60S ribosomal protein L4-A (chains C)
MSRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQT
SAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRY
ATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLK
VLKSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAP
GAHLGRFVIWTEAAFTKLDQVWGSETVASSKVGYTLPSHIISTSDVTRIINSSEIQSAIR
PAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKAEKTGTKPAAVFTETLK
HD
Sequence of entity 7 (D), FASTA
>5APO_7 60S ribosomal protein L5 (chains D)
MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDI
ICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYK
GVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRF
PGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIY
TSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ
Sequence of entity 8 (E), FASTA
>5APO_8 60S RIBOSOMAL PROTEIN EL6 (chains E)
MSAQKAPKWYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLED
NTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEXXXXXXXXXXX
XXXXXXXKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF
Sequence of entity 9 (F), FASTA
>5APO_9 60S ribosomal protein L7-A (chains F)
MAAEKILTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAER
NIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVT
KATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILS
IDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLV
KSMN
Sequence of entity 10 (G), FASTA
>5APO_10 60S ribosomal protein L8-A (chains G)
MAPGKKVAPAPFGAKSTKSNKTRNPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQR
QKKILSIRLKVPPTIAQFQYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGK
SKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIV
KGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGN
KAQAKMDKRAKNSDSA
Sequence of entity 11 (H), FASTA
>5APO_11 60S ribosomal protein L9-A (chains H)
MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNG
GRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGD
KKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIY
VSHKGFITEDL
Sequence of entity 12 (I), FASTA
>5APO_12 60S ribosomal protein L10 (chains I)
MARRPARCYRYQKNKPYPKSRYNRAVPDSKIRIYDLGKKKATVDEFPLCVHLVSNELEQL
SSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWG
KPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPE
YLKKREAGEVKDDGAFVKFLSKKGSLENNIREFPEYFAAQA
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ZN | Zinc ion | Zn | 6 |
| MG | Magnesium ion | Mg | 280 |
Primary citation
Insertion of the Biogenesis Factor Rei1 Probes the Ribosomal Tunnel during 60S Maturation. Greber, B.J., Gerhardy, S., Leitner, A. et al. Cell (2016) 164:91-102. DOI 10.1016/j.cell.2015.11.027 · PubMed
Other PDB entries of the same protein (UniProt P0CX45 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 9PN5 1.75 Å, Composite map of hypomethylated 80S ribosome treated with hygromycin B
- 8CCS 1.97 Å, 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex
- 8CDR 2.04 Å, Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2…
- 8CEH 2.05 Å, Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2…
- 8P8N 2.15 Å, Mouse RPL39 integrated into the yeast 60S ribosomal subunit
- 8PFR 2.15 Å, Mouse RPL39L integrated into the yeast 60S ribosomal subunit
- 8EVT 2.2 Å, Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome…
- 8T2Y 2.2 Å, Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA,…
- 8P8U 2.23 Å, Yeast 60S ribosomal subunit
- 8CGN 2.28 Å, Non-rotated 80S S. cerevisiae ribosome with ligands
- 8ZHC 2.3 Å, pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- 7UOO 2.34 Å, Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state
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