5H4P: 60S ribosomal protein L2-A
Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1. Determined by electron microscopy at 3.07 Å resolution. Released 25 Jan 2017.
- Method
- Electron microscopy
- Resolution
- 3.07 Å
- Organisms
- Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
- Chains
- 44
- Atoms
- 122,929
- Mol. weight
- 1945.4 kDa
- Released
- 25 Jan 2017
Explore 5H4P in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
5H4P contains 276 α-helices and 306 β-strands across 41 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain a: 4 helices, 7 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 7-9 | 3 | |
| α-helix | 42-45 | 4 | |
| β-strand | 72-74 | 3 | 2 |
| α-helix | 84-91 | 8 | |
| β-strand | 99-100 | 2 | 50 |
| β-strand | 101-103 | 3 | 3 |
| β-strand | 111-113 | 3 | 2 |
| β-strand | 124-127 | 4 | 3 |
| β-strand | 129-130 | 2 | 2 |
| α-helix | 132-141 | 10 | |
| β-strand | 144-147 | 4 | 3 |
Chain A: 8 helices, 17 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 29-32 | 4 | |
| α-helix | 34-37 | 4 | |
| β-strand | 40-49 | 10 | 4 |
| β-strand | 58-64 | 7 | 4 |
| β-strand | 71-77 | 7 | 4 |
| α-helix | 78 | 1 | |
| β-strand | 79 | 1 | 5 |
| β-strand | 83 | 1 | 6 |
| β-strand | 87-91 | 5 | 4 |
| β-strand | 101-103 | 3 | 4 |
| α-helix | 104-106 | 3 | |
| β-strand | 112-114 | 3 | 4 |
| β-strand | 116 | 1 | 7 |
| β-strand | 126 | 1 | 7 |
| β-strand | 134-140 | 7 | 4 |
| β-strand | 145-149 | 5 | 4 |
| β-strand | 155-158 | 4 | 4 |
| β-strand | 163-166 | 4 | 4 |
| α-helix | 168 | 1 | |
| β-strand | 169 | 1 | 5 |
| α-helix | 174-176 | 3 | |
| α-helix | 186-189 | 4 | |
| α-helix | 201-203 | 3 | |
| β-strand | 224-225 | 2 | 8 |
| β-strand | 237-238 | 2 | 8 |
Chain b: 2 helices, 1 β-strand
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-19 | 8 | |
| β-strand | 22 | 1 | 83 |
| α-helix | 37-57 | 21 | |
Chain B: 15 helices, 20 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 27-28 | 2 | |
| α-helix | 33-35 | 3 | |
| α-helix | 40-41 | 2 | |
| β-strand | 43 | 1 | 10 |
| β-strand | 45-60 | 16 | 11 |
| β-strand | 70-81 | 12 | 11 |
| α-helix | 82-83 | 2 | |
| β-strand | 84-86 | 3 | 12 |
| β-strand | 88-93 | 6 | 12 |
| β-strand | 100-106 | 7 | 12 |
| α-helix | 112-116 | 5 | |
| α-helix | 134-136 | 3 | |
| α-helix | 144-153 | 10 | |
| β-strand | 157-163 | 7 | 12 |
| α-helix | 166-168 | 3 | |
| β-strand | 178-182 | 5 | 12 |
| β-strand | 183 | 1 | 10 |
| α-helix | 188-198 | 11 | |
| β-strand | 199 | 1 | 12 |
| β-strand | 202-203 | 2 | 12 |
| α-helix | 205-207 | 3 | |
| β-strand | 214-220 | 7 | 11 |
| α-helix | 221-223 | 3 | |
| β-strand | 225-227 | 3 | 13 |
| α-helix | 229-233 | 5 | |
| α-helix | 235-239 | 5 | |
| β-strand | 268-270 | 3 | 13 |
| β-strand | 274-286 | 13 | 11 |
| α-helix | 307 | 1 | |
| β-strand | 311 | 1 | 14 |
| β-strand | 315 | 1 | 14 |
| β-strand | 320-325 | 6 | 11 |
| β-strand | 335-339 | 5 | 11 |
| β-strand | 356-359 | 4 | 11 |
| α-helix | 373-380 | 8 | |
Chain c: 4 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 10-20 | 11 | |
| β-strand | 22-25 | 4 | 9 |
| α-helix | 27-34 | 8 | |
| β-strand | 42-44 | 3 | 9 |
| α-helix | 50-63 | 14 | |
| β-strand | 67-69 | 3 | 9 |
| α-helix | 74-80 | 7 | |
| β-strand | 89-94 | 6 | 9 |
Chain C: 18 helices, 13 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 6-11 | 6 | 17 |
| β-strand | 13-20 | 8 | 17 |
| α-helix | 32-42 | 11 | |
| β-strand | 62-64 | 3 | 18 |
| β-strand | 75-77 | 3 | 18 |
| β-strand | 88 | 1 | 18 |
| α-helix | 98-99 | 2 | |
| α-helix | 115-122 | 8 | |
| α-helix | 124-127 | 4 | |
| α-helix | 132-136 | 5 | |
| β-strand | 137 | 1 | 19 |
| β-strand | 139 | 1 | 19 |
| β-strand | 150-152 | 3 | 17 |
| α-helix | 154-158 | 5 | |
| α-helix | 162-172 | 11 | |
| α-helix | 175-180 | 6 | |
| β-strand | 186-187 | 2 | 20 |
| β-strand | 199-200 | 2 | 20 |
| β-strand | 206-209 | 4 | 17 |
| α-helix | 215-218 | 4 | |
| β-strand | 226-229 | 4 | 17 |
| α-helix | 240-242 | 3 | |
| β-strand | 248-251 | 4 | 17 |
| α-helix | 252-261 | 10 | |
| α-helix | 286-291 | 6 | |
| α-helix | 294-298 | 5 | |
| α-helix | 300-302 | 3 | |
| α-helix | 307-310 | 4 | |
| α-helix | 321-324 | 4 | |
| α-helix | 331-336 | 6 | |
| α-helix | 353-359 | 7 | |
Chain d: 2 helices, 7 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 9-11 | 3 | 15 |
| β-strand | 13-15 | 3 | 16 |
| α-helix | 28-43 | 16 | |
| β-strand | 49-51 | 3 | 15 |
| α-helix | 53-60 | 8 | |
| β-strand | 70-72 | 3 | 16 |
| β-strand | 73-79 | 7 | 15 |
| β-strand | 89-95 | 7 | 15 |
| β-strand | 107-108 | 2 | 15 |
Chain D: 20 helices, 8 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 10-15 | 6 | |
| α-helix | 16-18 | 3 | |
| α-helix | 22-25 | 4 | |
| α-helix | 30-37 | 8 | |
| α-helix | 41-43 | 3 | |
| β-strand | 50-55 | 6 | 22 |
| β-strand | 60-66 | 7 | 22 |
| β-strand | 73-79 | 7 | 22 |
| α-helix | 80-82 | 3 | |
| α-helix | 83-86 | 4 | |
| α-helix | 95-110 | 16 | |
| α-helix | 111-115 | 5 | |
| α-helix | 134-135 | 2 | |
| α-helix | 139-142 | 4 | |
| β-strand | 143 | 1 | 23 |
| β-strand | 145-147 | 3 | 22 |
| α-helix | 159-168 | 10 | |
| β-strand | 172 | 1 | 23 |
| β-strand | 183 | 1 | 24 |
| β-strand | 190 | 1 | 24 |
| α-helix | 192-200 | 9 | |
| α-helix | 202-214 | 13 | |
| α-helix | 216-221 | 6 | |
| α-helix | 224-228 | 5 | |
| α-helix | 236-247 | 12 | |
| α-helix | 254-256 | 3 | |
| α-helix | 262-272 | 11 | |
| α-helix | 279-290 | 12 | |
33 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| 25S ribosomal RNA | 1 | RNA | 3396 | Saccharomyces cerevisiae | |
| 5S ribosomal RNA | 3 | RNA | 121 | Saccharomyces cerevisiae | |
| 5.8S ribosomal RNA | 4 | RNA | 158 | Saccharomyces cerevisiae | |
| 60S ribosomal protein L2-A | A | protein | 246 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P0CX45 (AlphaFold model) |
| 60S ribosomal protein L3 | B | protein | 387 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P14126 (AlphaFold model) |
| 60S ribosomal protein L4-A | C | protein | 361 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P10664 (AlphaFold model) |
| 60S ribosomal protein L5 | D | protein | 297 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P26321 (AlphaFold model) |
| 60S ribosomal protein L6-A | E | protein | 176 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Q02326 |
| 60S ribosomal protein L7-A | F | protein | 244 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P05737 |
| 60S ribosomal protein L8-A | G | protein | 256 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P17076 |
| 60S ribosomal protein L9-A | H | protein | 191 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P05738 |
| 60S ribosomal protein L11-A | J | protein | 174 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P0C0W9 |
32 more molecules are not listed.
Sequence of entity 1 (1), FASTA
>5H4P_1 25S ribosomal RNA (chains 1)
GUUUGACCUCAAAUCAGGUAGGAGUACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGA
AAAGAAACCAACCGGGAUUGCCUUAGUAACGGCGAGUGAAGCGGCAAAAGCUCAAAUUUG
AAAUCUGGUACCUUCGGUGCCCGAGUUGUAAUUUGGAGAGGGCAACUUUGGGGCCGUUCC
UUGUCUAUGUUCCUUGGAACAGGACGUCAUAGAGGGUGAGAAUCCCGUGUGGCGAGGAGU
GCGGUUCUUUGUAAAGUGCCUUCGAAGAGUCGAGUUGUUUGGGAAUGCAGCUCUAAGUGG
GUGGUAAAUUCCAUCUAAAGCUAAAUAUUGGCGAGAGACCGAUAGCGAACAAGUACAGUG
AUGGAAAGAUGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUACGUGAAAUUGUUGAAAGG
GAAGGGCAUUUGAUCAGACAUGGUGUUUUGUGCCCUCUGCUCCUUGUGGGUAGGGGAAUC
UCGCAUUUCACUGGGCCAGCAUCAGUUUUGGUGGCAGGAUAAAUCCAUAGGAAUGUAGCU
UGCCUCGGUAAGUAUUAUAGCCUGUGGGAAUACUGCCAGCUGGGACUGAGGACUGCGACG
UAAGUCAAGGAUGCUGGCAUAAUGGUUAUAUGCCGCCCGUCUUGAAACACGGACCAAGGA
GUCUAACGUCUAUGCGAGUGUUUGGGUGUAAAACCCAUACGCGUAAUGAAAGUGAACGUA
GGUUGGGGCCUCGCAAGAGGUGCACAAUCGACCGAUCCUGAUGUCUUCGGAUGGAUUUGA
GUAAGAGCAUAGCUGUUGGGACCCGAAAGAUGGUGAACUAUGCCUGAAUAGGGUGAAGCC
AGAGGAAACUCUGGUGGAGGCUCGUAGCGGUUCUGACGUGCAAAUCGAUCGUCGAAUUUG
GGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCU
CAGGAUAGCAGAAGCUCGUAUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGAGGUUCCGGG
GUCGAAAUGACCUUGACCUAUUCUCAAACUUUAAAUAUGUAAGAAGUCCUUGUUACUUAA
UUGAACGUGGACAUUUGAAUGAAGAGCUUUUAGUGGGCCAUUUUUGGUAAGCAGAACUGG
CGAUGCGGGAUGAACCGAACGUAGAGUUAAGGUGCCGGAAUACACGCUCAUCAGACACCA
CAAAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAA
GGAGUGUGUAACAACUCACCGGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCUCAAGC
GUGUUACCUAUACUCUACCGUCAGGGUUGAUAUGAUGCCCUGACGAGUAGGCAGGCGUGG
AGGUCAGUGACGAAGCCUAGACCGUAAGGUCGGGUCGAACGGCCUCUAGUGCAGAUCUUG
GUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAAGUGGGGAAAGGUUCCACG
UCAACAGCAGUUGGACGUGGGUUAGUCGAUCCUAAGAGAUGGGGAAGCUCCGUUUCAAAG
GCCUGAUUUUAUGCAGGCCACCAUCGAAAGGGAAUCCGGUUAAGAUUCCGGAACCUGGAU
AUGGAUUCUUCACGGUAACGUAACUGAAUGUGGAGACGUCGGCGCGAGCCCUGGGAGGAG
UUAUCUUUUCUUCUUAACAGCUUAUCACCCCGGAAUUGGUUUAUCCGGAGAUGGGGUCUU
AUGGCUGGAAGAGGCCAGCACCUUUGCUGGCUCCGGUGCGCUUGUGACGGCCCGUGAAAA
UCCACAGGAAGGAAUAGUUUUCAUGCCAGGUCGUACUGAUAACCGCAGCAGGUCUCCAAG
GUGAACAGCCUCUAGUUGAUAGAAUAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGU
AACUUCGGGAUAAGGAUUGGCUCUAAGGGUCGGGUAGUGAGGGCCUUGGUCAGACGCAGC
GGGCGUGCUUGUGGACUGCUUGGUGGGGCUUGCUCUGCUAGGCGGACUACUUGCGUGCCU
UGUUGUAGACGGCCUUGGUAGGUCUCUUGUAGACCGUCGCUUGCUACAAUUAACGAUCAA
CUUAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUG
GUCAGAAAGUGAUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAA
GAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAA
AUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCU
AUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAG
AAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAU
AAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUUCUUUACUUAUUCAA
UGAAGCGGAGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAGGUCCCAUUCGGGGCUGA
UCCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAACGA
UAACGCAGAUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGG
UAAAAGCCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUC
GAUCCUUUAGUCCCUCGGAAUUUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAA
CUGGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAUGUCGGCU
CUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGA
ACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAAUGUUA
CCGCAAUAGUAAUUGAACUUAGUACGAGAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGC
GGCUGUCUGAUCAGGCAUUGCCGCGAAGCUACCAUCCGCUGGAUUAUGGCUGAACGCCUC
UAAGUCAGAAUCCAUGCUAGAACGCGGUGAUUUCUUUGCUCCACACAAUAUAGAUGGAUA
CGAAUAAGGCGUCCUUGUGGCGUCGCUGAACCAUAGCAGGCUAGCAACGGUGCACUUGGC
GGAAAGGCCUUGGGUGCUUGCUGGCGAAUUGCAAUGUCAUUUUGCGUGGGGAUAAAUCAU
UUGUAUACGACUUAGAUGUACAACGGGGUAUUGUAAGCAGUAGAGUAGCCUUGUUGUUAC
GAUCUGCUGAGAUUAAGCCUUUGUUGUCUGAUUUGU
Sequence of entity 2 (3), FASTA
>5H4P_2 5S ribosomal RNA (chains 3)
GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUG
GUAAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUC
U
Sequence of entity 3 (4), FASTA
>5H4P_3 5.8S ribosomal RNA (chains 4)
AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAU
ACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCC
UUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU
Sequence of entity 4 (A), FASTA
>5H4P_4 60S ribosomal protein L2-A (chains A)
GRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAKV
VFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPG
DRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLLK
AGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAAR
RTGLLR
Sequence of entity 5 (B), FASTA
>5H4P_5 60S ribosomal protein L3 (chains B)
MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDL
DRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK
NWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVHTQIRKTPLAQKKAHLAE
IQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPR
KTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEANGATSFDR
TKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWID
TASKFGKGRFQTPAEKHAFMGTLKKDL
Sequence of entity 6 (C), FASTA
>5H4P_6 60S ribosomal protein L4-A (chains C)
SRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQTS
AESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRYA
TASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLKV
LKSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAPG
AHLGRFVIWTEAAFTKLDQVWGSETVASSKVGYTLPSHIISTSDVTRIINSSEIQSAIRP
AGQATQKRTHVLKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKAEKTGTKPAAVFTETLKH
D
Sequence of entity 7 (D), FASTA
>5H4P_7 60S ribosomal protein L5 (chains D)
MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDI
ICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYK
GVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRF
PGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIY
TSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ
Sequence of entity 8 (E), FASTA
>5H4P_8 60S ribosomal protein L6-A (chains E)
MSAQKAPKWYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLED
NTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEAN
LFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF
Sequence of entity 9 (F), FASTA
>5H4P_9 60S ribosomal protein L7-A (chains F)
MAAEKILTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAER
NIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVT
KATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILS
IDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLV
KSMN
Sequence of entity 10 (G), FASTA
>5H4P_10 60S ribosomal protein L8-A (chains G)
MAPGKKVAPAPFGAKSTKSNKTRNPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQR
QKKILSIRLKVPPTIAQFQYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGK
SKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIV
KGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGN
KAQAKMDKRAKNSDSA
Sequence of entity 11 (H), FASTA
>5H4P_11 60S ribosomal protein L9-A (chains H)
MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNG
GRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGD
KKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIY
VSHKGFITEDL
Sequence of entity 12 (J), FASTA
>5H4P_12 60S ribosomal protein L11-A (chains J)
MSAKAQNPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIR
RNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIKYDPSI
GIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTTKEDTVSWFKQKYDADVLDK
Primary citation
Structural snapshot of cytoplasmic pre-60S ribosomal particles bound by Nmd3, Lsg1, Tif6 and Reh1. Ma, C., Wu, S., Li, N. et al. Nat Struct Mol Biol (2017) 24:214-220. DOI 10.1038/nsmb.3364 · PubMed
Other PDB entries of the same protein (UniProt P0CX45 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 9PN5 1.75 Å, Composite map of hypomethylated 80S ribosome treated with hygromycin B
- 8CCS 1.97 Å, 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex
- 8CDR 2.04 Å, Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2…
- 8CEH 2.05 Å, Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2…
- 8P8N 2.15 Å, Mouse RPL39 integrated into the yeast 60S ribosomal subunit
- 8PFR 2.15 Å, Mouse RPL39L integrated into the yeast 60S ribosomal subunit
- 8EVT 2.2 Å, Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome…
- 8T2Y 2.2 Å, Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA,…
- 8P8U 2.23 Å, Yeast 60S ribosomal subunit
- 8CGN 2.28 Å, Non-rotated 80S S. cerevisiae ribosome with ligands
- 8ZHC 2.3 Å, pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- 7UOO 2.34 Å, Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state
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