5SUJ: Uncharacterized protein

Crystal structure of uncharacterized protein LPG2148 from Legionella pneumophila. Determined by X-ray diffraction at 2.36 Å resolution. Released 17 Aug 2016.

Method: X-ray diffraction
Resolution: 2.36 Å
Organism: Legionella pneumophila subsp. pneumophila
Chains: 2
Atoms: 6,326
Mol. weight: 92.7 kDa
Released: 17 Aug 2016

Explore 5SUJ in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

5SUJ contains 48 α-helices and 24 β-strands across 2 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain A: 24 helices, 12 β-strands

Element	Residues	Length	Sheet
α-helix	16-31	16
α-helix	32-36	5
α-helix	40-51	12
α-helix	52-54	3
α-helix	61-76	16
α-helix	83-95	13
α-helix	97-105	9
α-helix	107-108	2
β-strand	109-110	2	1
α-helix	111-112	2
α-helix	116-123	8
β-strand	132-141	10	1
β-strand	146-149	4	2
α-helix	161	1
β-strand	164-167	4	2
β-strand	172-175	4	2
β-strand	181-183	3	2
α-helix	188-196	9
β-strand	204-205	2	2
α-helix	218-232	15
α-helix	234-236	3
β-strand	240-250	11	1
α-helix	251-254	4
α-helix	257-259	3
β-strand	262-264	3	1
β-strand	267	1	3
β-strand	271	1	3
α-helix	273-278	6
α-helix	281-286	6
α-helix	290-302	13
α-helix	306-317	12
α-helix	319	1
α-helix	329-331	3
β-strand	337-345	9	1
α-helix	348-363	16
α-helix	370-393	24

Chain B: 24 helices, 12 β-strands

Element	Residues	Length	Sheet
α-helix	16-31	16
α-helix	32-36	5
α-helix	40-51	12
α-helix	52-54	3
α-helix	61-76	16
α-helix	83-95	13
α-helix	97-105	9
α-helix	107-108	2
β-strand	109-110	2	4
α-helix	111-112	2
α-helix	116-123	8
β-strand	132-141	10	4
β-strand	146-149	4	5
α-helix	161	1
β-strand	164-167	4	5
β-strand	172-175	4	5
β-strand	181-183	3	5
α-helix	188-197	10
β-strand	204-205	2	5
α-helix	218-232	15
α-helix	234-236	3
β-strand	240-250	11	4
α-helix	251-254	4
α-helix	257-259	3
β-strand	262-264	3	4
β-strand	267	1	6
β-strand	271	1	6
α-helix	273-278	6
α-helix	281-286	6
α-helix	290-302	13
α-helix	306-317	12
α-helix	319	1
α-helix	329-331	3
β-strand	337-345	9	4
α-helix	348-363	16
α-helix	370-392	23

Molecules and chains

Molecule	Chains	Type	Length	Organism	UniProt
Uncharacterized protein	A, B	protein	400	Legionella pneumophila subsp. pneumophila	Q5ZTL3 (AlphaFold model)

Sequence of entity 1 (A, B), FASTA

>5SUJ_1 Uncharacterized protein (chains A, B)
MIVRGINMTKIKLESPGFMVHKKLKSMSQSYGVMMTGVPAEVLGQMQAERSIPSINKTGN
LKQQIAKEVSKVCHMMTEPTQSCGQASNDVCELLLGKIEAEKFHFTKYEALSADGDNLKN
VLENTAPSSTNLLIRFEIDREDPPIVLVKTKNENFNPETAVKNKIYLLENKLYFIDKMGN
LFNLGPGKKKCTQLFNAIGDSAEYSLCDPFVLEEPEKPEDFAISEIVDIFNEQKERFDFW
IGSHSFTIYIPQTLGESPRQFYPYQAYFGSHTLQDWFVSDKDEYLSRIGIDKYIEKLAVL
GKTTNTKERSDIYAEFFSKRGREAFFCAHLNEKRQPLRVKFKITEINPELALKNLQETQE
FIDTHPGENPSDKVENYRNRAKLAMTEHLESLLDIKPESS

Primary citation

Discovery of Ubiquitin Deamidases in the Pathogenic Arsenal of Legionella pneumophila. Valleau, D., Quaile, A.T., Cui, H. et al. Cell Rep (2018) 23:568-583. DOI 10.1016/j.celrep.2018.03.060 · PubMed

Other PDB entries of the same protein (UniProt Q5ZTL3 (AlphaFold model), which also has an AlphaFold model), best resolution first:

6K11 1.94 Å, Crystal structure of MvcA from Legionella pneumophila
6JKY 2.45 Å, Crystal structure of MvcA-UBE2N-Ub complex from Legionella pneumophila
6LP2 2.48 Å, Structure of Lpg2148/UBE2N-Ub complex
5YM9 2.5 Å, Crystal Structure of the Deamidase from Legionella pneumophila
6LW4 2.7 Å, Structure of Lpg2148/Lpg2149 complex
7BXF 2.7 Å, MvcA-Lpg2149 complex

Browse structure collections

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