5Z3G: Nucleolar pre-60S ribosome
Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP). Determined by electron microscopy at 3.65 Å resolution. Released 11 Apr 2018.
- Method
- Electron microscopy
- Resolution
- 3.65 Å
- Organisms
- Saccharomyces cerevisiae, Saccharomyces cerevisiae S288c
- Chains
- 35
- Atoms
- 85,899
- Mol. weight
- 2136.09 kDa
- Released
- 11 Apr 2018
Explore 5Z3G in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
5Z3G contains 247 α-helices and 271 β-strands across 32 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain a: 5 helices, 15 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 33-37 | 5 | 1 |
| α-helix | 43-55 | 13 | |
| β-strand | 60-61 | 2 | 1 |
| α-helix | 74-80 | 7 | |
| β-strand | 85-89 | 5 | 1 |
| β-strand | 92 | 1 | 2 |
| β-strand | 96 | 1 | 2 |
| β-strand | 99-102 | 4 | 1 |
| β-strand | 109-111 | 3 | 3 |
| β-strand | 115-118 | 4 | 4 |
| β-strand | 136-140 | 5 | 4 |
| α-helix | 141-145 | 5 | |
| α-helix | 147-159 | 13 | |
| β-strand | 175-182 | 8 | 4 |
| β-strand | 185-194 | 10 | 4 |
| β-strand | 211-214 | 4 | 4 |
| β-strand | 218-221 | 4 | 4 |
| β-strand | 225-229 | 5 | 3 |
| β-strand | 232-238 | 7 | 3 |
| α-helix | 245-252 | 8 | |
Chain b: 3 helices, 1 β-strand
| Element | Residues | Length | Sheet |
|---|
| α-helix | 199-208 | 10 | |
| β-strand | 222-225 | 4 | 4 |
| α-helix | 239-263 | 25 | |
| α-helix | 270-271 | 2 | |
Chain c: 6 helices, 9 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-20 | 9 | |
| α-helix | 26-29 | 4 | |
| β-strand | 33-34 | 2 | 5 |
| β-strand | 35 | 1 | 6 |
| α-helix | 37-39 | 3 | |
| α-helix | 40-44 | 5 | |
| β-strand | 47-48 | 2 | 5 |
| β-strand | 55-58 | 4 | 6 |
| β-strand | 67-69 | 3 | 6 |
| β-strand | 70-72 | 3 | 7 |
| β-strand | 81-88 | 8 | 7 |
| β-strand | 94-98 | 5 | 7 |
| α-helix | 101-103 | 3 | |
| β-strand | 104-108 | 5 | 6 |
| α-helix | 113-121 | 9 | |
Chain d: 8 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 92-117 | 26 | |
| α-helix | 133-171 | 39 | |
| α-helix | 182-187 | 6 | |
| α-helix | 201-211 | 11 | |
| α-helix | 222-229 | 8 | |
| α-helix | 241-247 | 7 | |
| α-helix | 262-265 | 4 | |
| α-helix | 272-277 | 6 | |
Chain D: 11 helices, 9 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 58-84 | 27 | |
| β-strand | 100-104 | 5 | 8 |
| β-strand | 129-133 | 5 | 8 |
| β-strand | 140-146 | 7 | 9 |
| α-helix | 157-166 | 10 | |
| β-strand | 173-179 | 7 | 9 |
| α-helix | 187-190 | 4 | |
| β-strand | 194-197 | 4 | 9 |
| α-helix | 201-209 | 9 | |
| β-strand | 213-215 | 3 | 10 |
| β-strand | 226-228 | 3 | 10 |
| α-helix | 232-238 | 7 | |
| α-helix | 248-254 | 7 | |
| α-helix | 262-268 | 7 | |
| β-strand | 271-272 | 2 | 9 |
| α-helix | 273-275 | 3 | |
| α-helix | 282-298 | 17 | |
| α-helix | 307-308 | 2 | |
| β-strand | 309-311 | 3 | 8 |
| α-helix | 314-321 | 8 | |
Chain E: 4 helices, 8 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 89-96 | 8 | 11 |
| α-helix | 104-111 | 8 | |
| β-strand | 113 | 1 | 12 |
| β-strand | 115 | 1 | 12 |
| β-strand | 119-124 | 6 | 11 |
| β-strand | 131-138 | 8 | 11 |
| α-helix | 142-152 | 11 | |
| β-strand | 156-157 | 2 | 13 |
| β-strand | 160-161 | 2 | 13 |
| β-strand | 164-168 | 5 | 11 |
| α-helix | 183-185 | 3 | |
| α-helix | 193-213 | 21 | |
Chain F: 7 helices, 22 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 43 | 1 | 15 |
| β-strand | 45-60 | 16 | 16 |
| β-strand | 72-81 | 10 | 16 |
| β-strand | 84-94 | 11 | 17 |
| β-strand | 99-101 | 3 | 17 |
| α-helix | 112-116 | 5 | |
| α-helix | 131-135 | 5 | |
| α-helix | 136 | 1 | |
| α-helix | 145-153 | 9 | |
| β-strand | 157-163 | 7 | 17 |
| α-helix | 166-168 | 3 | |
| β-strand | 178-182 | 5 | 17 |
| β-strand | 183 | 1 | 15 |
| α-helix | 189-198 | 10 | |
| β-strand | 201-203 | 3 | 17 |
| β-strand | 214-215 | 2 | 18 |
| β-strand | 216-218 | 3 | 16 |
| β-strand | 220 | 1 | 19 |
| β-strand | 225 | 1 | 20 |
| β-strand | 270 | 1 | 20 |
| β-strand | 274 | 1 | 19 |
| β-strand | 280-281 | 2 | 18 |
| β-strand | 282-285 | 4 | 16 |
| β-strand | 311 | 1 | 21 |
| β-strand | 314 | 1 | 21 |
| β-strand | 320-325 | 6 | 16 |
| β-strand | 334-339 | 6 | 16 |
| β-strand | 354-359 | 6 | 16 |
| α-helix | 373-380 | 8 | |
Chain G: 14 helices, 13 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 5-6 | 2 | 25 |
| β-strand | 9 | 1 | 26 |
| β-strand | 20-21 | 2 | 25 |
| α-helix | 29-30 | 2 | |
| α-helix | 32-43 | 12 | |
| β-strand | 63 | 1 | 27 |
| β-strand | 76 | 1 | 27 |
| β-strand | 88 | 1 | 27 |
| α-helix | 115-131 | 17 | |
| α-helix | 134-138 | 5 | |
| β-strand | 150-152 | 3 | 26 |
| α-helix | 154-158 | 5 | |
| α-helix | 162-172 | 11 | |
| α-helix | 175-180 | 6 | |
| β-strand | 186-187 | 2 | 28 |
| β-strand | 199-200 | 2 | 28 |
| β-strand | 206-209 | 4 | 29 |
| α-helix | 216-221 | 6 | |
| β-strand | 226-229 | 4 | 29 |
| α-helix | 235-238 | 4 | |
| β-strand | 248 | 1 | 29 |
| β-strand | 249-251 | 3 | 26 |
| α-helix | 252-261 | 10 | |
| α-helix | 287-290 | 4 | |
| α-helix | 321-326 | 6 | |
| α-helix | 331-334 | 4 | |
| α-helix | 353-360 | 8 | |
24 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| 25S rRNA | A | RNA | 3396 | Saccharomyces cerevisiae | |
| 5.8S rRNA | B | RNA | 158 | Saccharomyces cerevisiae | |
| ITS2 RNA | C | RNA | 232 | Saccharomyces cerevisiae | |
| Ribosome biogenesis protein RLP7 | D | protein | 322 | Saccharomyces cerevisiae S288c | P40693 (AlphaFold model) |
| Ribosome biogenesis protein 15 | E | protein | 220 | Saccharomyces cerevisiae S288c | P53927 (AlphaFold model) |
| 60S ribosomal protein L3 | F | protein | 387 | Saccharomyces cerevisiae S288c | P14126 (AlphaFold model) |
| 60S ribosomal protein L4-A | G | protein | 362 | Saccharomyces cerevisiae S288c | P10664 (AlphaFold model) |
| Proteasome-interacting protein CIC1 | H | protein | 376 | Saccharomyces cerevisiae S288c | P38779 |
| 60S ribosomal protein L6-A | I | protein | 176 | Saccharomyces cerevisiae S288c | Q02326 |
| 60S ribosomal protein L7-A | J | protein | 244 | Saccharomyces cerevisiae S288c | P05737 |
| 60S ribosomal protein L8-A | K | protein | 256 | Saccharomyces cerevisiae S288c | P17076 |
| 60S ribosomal protein L9-A | L | protein | 191 | Saccharomyces cerevisiae S288c | P05738 |
23 more molecules are not listed.
Sequence of entity 1 (A), FASTA
>5Z3G_1 25S rRNA (chains A)
GUUUGACCUCAAAUCAGGUAGGAGUACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGA
AAAGAAACCAACCGGGAUUGCCUUAGUAACGGCGAGUGAAGCGGCAAAAGCUCAAAUUUG
AAAUCUGGUACCUUCGGUGCCCGAGUUGUAAUUUGGAGAGGGCAACUUUGGGGCCGUUCC
UUGUCUAUGUUCCUUGGAACAGGACGUCAUAGAGGGUGAGAAUCCCGUGUGGCGAGGAGU
GCGGUUCUUUGUAAAGUGCCUUCGAAGAGUCGAGUUGUUUGGGAAUGCAGCUCUAAGUGG
GUGGUAAAUUCCAUCUAAAGCUAAAUAUUGGCGAGAGACCGAUAGCGAACAAGUACAGUG
AUGGAAAGAUGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUACGUGAAAUUGUUGAAAGG
GAAGGGCAUUUGAUCAGACAUGGUGUUUUGUGCCCUCUGCUCCUUGUGGGUAGGGGAAUC
UCGCAUUUCACUGGGCCAGCAUCAGUUUUGGUGGCAGGAUAAAUCCAUAGGAAUGUAGCU
UGCCUCGGUAAGUAUUAUAGCCUGUGGGAAUACUGCCAGCUGGGACUGAGGACUGCGACG
UAAGUCAAGGAUGCUGGCAUAAUGGUUAUAUGCCGCCCGUCUUGAAACACGGACCAAGGA
GUCUAACGUCUAUGCGAGUGUUUGGGUGUAAAACCCAUACGCGUAAUGAAAGUGAACGUA
GGUUGGGGCCUCGCAAGAGGUGCACAAUCGACCGAUCCUGAUGUCUUCGGAUGGAUUUGA
GUAAGAGCAUAGCUGUUGGGACCCGAAAGAUGGUGAACUAUGCCUGAAUAGGGUGAAGCC
AGAGGAAACUCUGGUGGAGGCUCGUAGCGGUUCUGACGUGCAAAUCGAUCGUCGAAUUUG
GGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCU
CAGGAUAGCAGAAGCUCGUAUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGAGGUUCCGGG
GUCGAAAUGACCUUGACCUAUUCUCAAACUUUAAAUAUGUAAGAAGUCCUUGUUACUUAA
UUGAACGUGGACAUUUGAAUGAAGAGCUUUUAGUGGGCCAUUUUUGGUAAGCAGAACUGG
CGAUGCGGGAUGAACCGAACGUAGAGUUAAGGUGCCGGAAUACACGCUCAUCAGACACCA
CAAAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAA
GGAGUGUGUAACAACUCACCGGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCUCAAGC
GUGUUACCUAUACUCUACCGUCAGGGUUGAUAUGAUGCCCUGACGAGUAGGCAGGCGUGG
AGGUCAGUGACGAAGCCUAGACCGUAAGGUCGGGUCGAACGGCCUCUAGUGCAGAUCUUG
GUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAAGUGGGGAAAGGUUCCACG
UCAACAGCAGUUGGACGUGGGUUAGUCGAUCCUAAGAGAUGGGGAAGCUCCGUUUCAAAG
GCCUGAUUUUAUGCAGGCCACCAUCGAAAGGGAAUCCGGUUAAGAUUCCGGAACCUGGAU
AUGGAUUCUUCACGGUAACGUAACUGAAUGUGGAGACGUCGGCGCGAGCCCUGGGAGGAG
UUAUCUUUUCUUCUUAACAGCUUAUCACCCCGGAAUUGGUUUAUCCGGAGAUGGGGUCUU
AUGGCUGGAAGAGGCCAGCACCUUUGCUGGCUCCGGUGCGCUUGUGACGGCCCGUGAAAA
UCCACAGGAAGGAAUAGUUUUCAUGCCAGGUCGUACUGAUAACCGCAGCAGGUCUCCAAG
GUGAACAGCCUCUAGUUGAUAGAAUAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGU
AACUUCGGGAUAAGGAUUGGCUCUAAGGGUCGGGUAGUGAGGGCCUUGGUCAGACGCAGC
GGGCGUGCUUGUGGACUGCUUGGUGGGGCUUGCUCUGCUAGGCGGACUACUUGCGUGCCU
UGUUGUAGACGGCCUUGGUAGGUCUCUUGUAGACCGUCGCUUGCUACAAUUAACGAUCAA
CUUAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUG
GUCAGAAAGUGAUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAA
GAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAA
AUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCU
AUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAG
AAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAU
AAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUUCUUUACUUAUUCAA
UGAAGCGGAGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAGGUCCCAUUCGGGGCUGA
UCCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAACGA
UAACGCAGAUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGG
UAAAAGCCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUC
GAUCCUUUAGUCCCUCGGAAUUUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAA
CUGGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAUGUCGGCU
CUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGA
ACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAAUGUUA
CCGCAAUAGUAAUUGAACUUAGUACGAGAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGC
GGCUGUCUGAUCAGGCAUUGCCGCGAAGCUACCAUCCGCUGGAUUAUGGCUGAACGCCUC
UAAGUCAGAAUCCAUGCUAGAACGCGGUGAUUUCUUUGCUCCACACAAUAUAGAUGGAUA
CGAAUAAGGCGUCCUUGUGGCGUCGCUGAACCAUAGCAGGCUAGCAACGGUGCACUUGGC
GGAAAGGCCUUGGGUGCUUGCUGGCGAAUUGCAAUGUCAUUUUGCGUGGGGAUAAAUCAU
UUGUAUACGACUUAGAUGUACAACGGGGUAUUGUAAGCAGUAGAGUAGCCUUGUUGUUAC
GAUCUGCUGAGAUUAAGCCUUUGUUGUCUGAUUUGU
Sequence of entity 2 (B), FASTA
>5Z3G_2 5.8S rRNA (chains B)
AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAU
ACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCC
UUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU
Sequence of entity 3 (C), FASTA
>5Z3G_3 ITS2 RNA (chains C)
CCUUCUCAAACAUUCUGUUUGGUAGUGAGUGAUACUCUUUGGAGUUAACUUGAAAUUGCU
GGCCUUUUCAUUGGAUGUUUUUUUUCCAAAGAGAGGUUUCUCUGCGUGCUUGAGGUAUAA
UGCAAGUACGGUCGUUUUAGGUUUUACCAACUGCGGCUAAUCUUUUUUUAUACUGAGCGU
AUUGGAACGUUAUCGAUAAGAAGAGAGCGUCUAGGCGAACAAUGUUCUUAAA
Sequence of entity 4 (D), FASTA
>5Z3G_4 Ribosome biogenesis protein RLP7 (chains D)
MSSTQDSKAQTLNSNPEILLRKRRNADRTRIERQELAKKKREEQIKKKRSNKNKFVRAES
IVAKTLATSREKERIKRVSILEDKKAKNETQHIASGKDFILKITEKANGAEENSVDLEET
EEEEDDGLIREKTTYDGKPALLFIVRVRGPLAVNIPNKAFKILSLLRLVETNTGVFVKLT
KNVYPLLKVIAPYVVIGKPSLSSIRSLIQKRGRIIYKGENEAEPHEIVLNDNNIVEEQLG
DHGIICVEDIIHEIATMGESFSVCNFFLQPFKLNREVSGFGSLNRLRKIKQREAESRTRQ
FSNAATAPVIEVDIDSLLAKLN
Sequence of entity 5 (E), FASTA
>5Z3G_5 Ribosome biogenesis protein 15 (chains E)
MVKSTSKTSTKETVTKQPTEEKPIQEKEELALETSSSSSDEEDEKDEDEIEGLAASDDEQ
SGTHKIKRLNPKKQANEKKSKDKKTLEEYSGIIYVSRLPHGFHEKELSKYFAQFGDLKEV
RLARNKKTGNSRHYGFLEFVNKEDAMIAQESMNNYLLMGHLLQVRVLPKGAKIEKLYKYK
KRVLVEKGITKPVKQLKDNMKQKHEERIKKLAKSGIEFKW
Sequence of entity 6 (F), FASTA
>5Z3G_6 60S ribosomal protein L3 (chains F)
MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDL
DRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK
NWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVHTQIRKTPLAQKKAHLAE
IQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPR
KTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEANGATSFDR
TKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWID
TASKFGKGRFQTPAEKHAFMGTLKKDL
Sequence of entity 7 (G), FASTA
>5Z3G_7 60S ribosomal protein L4-A (chains G)
MSRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQT
SAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRY
ATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLK
VLKSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAP
GAHLGRFVIWTEAAFTKLDQVWGSETVASSKVGYTLPSHIISTSDVTRIINSSEIQSAIR
PAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKAEKTGTKPAAVFTETLK
HD
Sequence of entity 8 (H), FASTA
>5Z3G_8 Proteasome-interacting protein CIC1 (chains H)
MAKKSNSKKSTPVSTPSKEKKKVIEKKSSTAIPRERVIKAVNELIKFTSKPQDENNEEGN
NGKKNLLEDDEEELKKDLQLIVVNNKSFTGTSKSFKLKLLNVKHSFYKPWKEASATAVKD
FKVLLILKDSDIKKVSEDDLFDQLDSEGIKVDEIICGKDLKTVYKAYEARNAFISQFSLI
LADDSIVTSLPKLMGGKAYNKVETTPISIRTHANKEFSLTTLTNNIKKVYMNQLPVKLPR
GTTLNVHLGNLEWLRPEEFVDNVELISEQLIKAYQIRSIFIKTNRSPVLPLYYNQDVLDE
LEAKKDKIEETHEDDMVTIDGVQVHLSTFNKGLMEIANPSELGSIFSKQINNAKKRSSSE
LEKESSESEAVKKAKS
Sequence of entity 9 (I), FASTA
>5Z3G_9 60S ribosomal protein L6-A (chains I)
MSAQKAPKWYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLED
NTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEAN
LFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF
Sequence of entity 10 (J), FASTA
>5Z3G_10 60S ribosomal protein L7-A (chains J)
MAAEKILTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAER
NIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVT
KATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILS
IDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLV
KSMN
Sequence of entity 11 (K), FASTA
>5Z3G_11 60S ribosomal protein L8-A (chains K)
MAPGKKVAPAPFGAKSTKSNKTRNPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQR
QKKILSIRLKVPPTIAQFQYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGK
SKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIV
KGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGN
KAQAKMDKRAKNSDSA
Sequence of entity 12 (L), FASTA
>5Z3G_12 60S ribosomal protein L9-A (chains L)
MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNG
GRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGD
KKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIY
VSHKGFITEDL
Primary citation
Cryo-EM structure of an early precursor of large ribosomal subunit reveals a half-assembled intermediate. Zhou, D., Zhu, X., Zheng, S. et al. Protein Cell (2019) 10:120-130. DOI 10.1007/s13238-018-0526-7 · PubMed
Other PDB entries of the same protein (UniProt P40693 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 7UOO 2.34 Å, Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state
- 7V08 2.36 Å, Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1…
- 7UQB 2.43 Å, Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a…
- 7UQZ 2.44 Å, Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1…
- 8V83 2.53 Å, 60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
- 8V87 2.66 Å, 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- 8V84 2.7 Å, 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
- 7U0H 2.76 Å, State NE1 nucleolar 60S ribosome biogenesis intermediate - Overall model
- 11AA 2.78 Å, Yeast co-transcriptional pre-60S assembly intermediate Nop12 RNP
- 7R6Q 2.98 Å, State E2 nucleolar 60S ribosome biogenesis intermediate - Foot region model
- 7NAC 3.04 Å, State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model
- 7NAD 3.04 Å, State E2 nucleolar 60S ribosomal biogenesis intermediate - Spb4 local refinement model
Browse structure collections
About this viewer
MolViewer shows 5Z3G directly in your browser with nothing to install. Switch between cartoon, ball-and-stick, spacefill and surface views, color by chain, secondary structure or B-factor, measure distances, angles and dihedrals, and share or embed the view.