6EDF: Fragment of a tyrosine-protein kinase
Fragment of a tyrosine-protein kinase. Determined by X-ray diffraction at 1.4 Å resolution. Released 29 Aug 2018.
- Method
- X-ray diffraction
- Resolution
- 1.4 Å
- Organism
- Homo sapiens
- Chains
- 1
- Atoms
- 693
- Mol. weight
- 8.94 kDa
- Released
- 29 Aug 2018
Explore 6EDF in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
6EDF contains 2 α-helices and 8 β-strands across 1 chain. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain A: 2 helices, 8 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 4-6 | 3 | 1 |
| β-strand | 10 | 1 | 2 |
| β-strand | 17 | 1 | 1 |
| β-strand | 20 | 1 | 2 |
| β-strand | 25-30 | 6 | 1 |
| β-strand | 36-41 | 6 | 1 |
| β-strand | 47-51 | 5 | 1 |
| α-helix | 52-54 | 3 | |
| β-strand | 55-57 | 3 | 1 |
| α-helix | 65-74 | 10 | |
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| FYN | A | protein | 79 | Homo sapiens | P06241 (AlphaFold model) |
Sequence of entity 1 (A), FASTA
>6EDF_1 FYN (chains A)
GGVTLFVALYDYEARTEDDISVHKGEKVQILNSSEGDWWEVRSLTTGETGYVPSNYVAPV
DGSAAMGPVLRLRAFYNGG
Primary citation
Fragment of a tyrosine-protein kinase. Tempel, W., Huang, H., Sochirca, I. et al. To be published.
Other PDB entries of the same protein (UniProt P06241 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 7A2P 0.9 Å, Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant at pH 5.0…
- 7A2X 0.92 Å, Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant in complex…
- 7A2O 0.94 Å, Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant at pH 4.5
- 7A2Q 0.94 Å, Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant at pH 3.0…
- 7A2Y 0.97 Å, Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant in complex…
- 7A2W 0.99 Å, Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant in complex…
- 8KDX 1.01 Å, Tau-S214 Phosphorylation Inhibits Fyn Kinase Interaction and Increases the Decay Time of…
- 7A2S 1.02 Å, Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant at pH 5.0
- 7A2R 1.05 Å, Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant at pH 6.0
- 7A2Z 1.14 Å, Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant in complex…
- 7A2T 1.22 Å, Crystal structure of the Fyn SH3 domain L112V-S114N-S115T-E121L-R123H mutant at pH 4.0
- 6IPY 1.34 Å, His-tagged Fyn SH3 domain R96I mutant
Browse structure collections
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