6MSE: 26S proteasome non-ATPase regulatory subunit 1

Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome. Determined by electron microscopy at 3.3 Å resolution. Released 21 Nov 2018.

Method
Electron microscopy
Resolution
3.3 Å
Organisms
Homo sapiens, Saccharomyces cerevisiae RM11-1a
Chains
48
Atoms
105,062
Mol. weight
1673.08 kDa
Ligands
ZN, ATP, MG, ADP
Released
21 Nov 2018

Explore 6MSE in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

6MSE contains 610 α-helices and 553 β-strands across 48 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain a: 21 helices, 5 β-strands

ElementResiduesLengthSheet
α-helix7-115
α-helix18-2811
α-helix29-313
α-helix36-4611
α-helix54-6613
α-helix74-8714
α-helix90-10314
α-helix111-12010
α-helix134-1418
α-helix150-16213
α-helix170-18213
α-helix190-20516
α-helix223-2286
α-helix232-24211
α-helix249-2568
α-helix265-2739
α-helix277-2837
β-strand291-292237
α-helix293-2997
α-helix304-3063
α-helix307-31711
β-strand320138
β-strand323-324237
β-strand330-332337
β-strand336138
α-helix343-37028
Chain A: 16 helices, 16 β-strands
ElementResiduesLengthSheet
α-helix42-6322
α-helix87-904
β-strand97-98273
β-strand100-103474
β-strand111-114474
β-strand120-123474
β-strand124-125273
β-strand140-142373
β-strand148-152573
α-helix159-1624
β-strand165175
α-helix174-1774
α-helix181-1877
α-helix188-1925
α-helix193-1964
α-helix200-2045
β-strand211-215575
α-helix222-23110
β-strand236-239475
α-helix242-2443
β-strand249176
α-helix252-26615
β-strand270-273475
α-helix294-30613
β-strand315-320675
β-strand339-342475
α-helix349-35810
β-strand364177
α-helix371-3744
α-helix382-39817
β-strand404177
α-helix406-42116
Chain b: 8 helices, 6 β-strands
ElementResiduesLengthSheet
β-strand4-10743
α-helix14-163
α-helix25-4319
β-strand48-53643
β-strand65143
α-helix69-746
α-helix87-948
α-helix96-983
β-strand106-113843
α-helix121-13212
β-strand137-142643
α-helix154-1585
β-strand170-171243
α-helix180-1834
Chain B: 19 helices, 16 β-strands
ElementResiduesLengthSheet
α-helix59-8022
α-helix94-1007
β-strand107-108274
β-strand111-115581
β-strand120-124581
β-strand131173
β-strand132-134381
β-strand135182
α-helix1361
β-strand149181
β-strand150-151283
β-strand152174
β-strand159182
β-strand161-162283
α-helix163-1653
α-helix169-1746
α-helix193-1975
α-helix198-2025
α-helix203-2064
α-helix211-2144
α-helix216-2194
β-strand221-225584
α-helix232-24110
β-strand246-251684
α-helix252-2543
α-helix262-27716
β-strand280-285684
α-helix302-31615
β-strand325-330684
α-helix339-3424
β-strand349-352484
α-helix361-3688
α-helix381-3844
α-helix392-40817
α-helix416-43116
Chain c: 10 helices, 10 β-strands
ElementResiduesLengthSheet
β-strand30-32349
α-helix35-4713
β-strand54-60749
β-strand66-73849
β-strand77-79350
β-strand84-86350
α-helix90-10011
β-strand107-114849
α-helix130-1367
α-helix1401
β-strand141-146649
β-strand156-162749
α-helix187-1882
α-helix189-1924
β-strand200-202349
β-strand204-205249
α-helix211-2188
α-helix225-2284
α-helix234-26128
α-helix283-30725
Chain C: 22 helices, 11 β-strands
ElementResiduesLengthSheet
α-helix22-254
α-helix27-6034
α-helix62-654
β-strand71-76674
β-strand80174
β-strand84-88574
β-strand94-98574
β-strand112-117674
β-strand122-126574
α-helix127-1293
α-helix133-1364
α-helix138-1403
α-helix145-1473
α-helix155-1617
α-helix162-1665
α-helix167-1704
α-helix173-1786
α-helix181-1833
β-strand185-189589
α-helix196-20611
β-strand210-213489
α-helix232-24110
β-strand244-248589
α-helix251-2555
α-helix259-2613
α-helix269-28214
β-strand290-295689
α-helix303-3064
β-strand314-316389
α-helix322-33211
α-helix344-3496
α-helix356-37217
α-helix380-39314
Chain d: 13 helices, 2 β-strands
ElementResiduesLengthSheet
α-helix17-2913
α-helix42-454
α-helix46-6520
α-helix68-8215
α-helix90-923
α-helix95-10713
α-helix112-1165
α-helix131-14212
α-helix150-1534
α-helix164-18320
α-helix193-1964
α-helix205-2128
β-strand217156
β-strand222156
α-helix238-25417
Chain D: 16 helices, 10 β-strands
ElementResiduesLengthSheet
α-helix40-7940
α-helix80-823
β-strand87-971174
β-strand100-105674
β-strand110-115674
α-helix121-1233
β-strand129-132474
β-strand139-142474
α-helix164-1663
α-helix171-18111
α-helix183-1853
α-helix189-1946
β-strand201-205593
α-helix212-22110
β-strand226-230593
α-helix242-25716
β-strand260-265693
α-helix267-2693
α-helix282-29716
β-strand305-310693
β-strand327-332693
α-helix338-34912
α-helix361-3633
α-helix372-38817
α-helix396-4038
α-helix415-4173

27 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
26S proteasome non-ATPase regulatory subunit 1Uprotein953Homo sapiensQ99460 (AlphaFold model)
26S proteasome non-ATPase regulatory subunit 3Vprotein533Homo sapiensO43242 (AlphaFold model)
26S proteasome non-ATPase regulatory subunit 12Wprotein456Homo sapiensO00232 (AlphaFold model)
26S proteasome non-ATPase regulatory subunit 11Xprotein422Homo sapiensO00231 (AlphaFold model)
26S proteasome non-ATPase regulatory subunit 6Yprotein389Homo sapiensQ15008
26S proteasome non-ATPase regulatory subunit 7Zprotein324Homo sapiensP51665
26S proteasome non-ATPase regulatory subunit 13aprotein376Homo sapiensQ9UNM6
26S proteasome non-ATPase regulatory subunit 4bprotein377Homo sapiensP55036
26S proteasome non-ATPase regulatory subunit 14cprotein309Homo sapiensO00487
26S proteasome non-ATPase regulatory subunit 8dprotein349Homo sapiensP48556
26S proteasome complex subunit SEM1eprotein70Homo sapiensP60896
26S proteasome non-ATPase regulatory subunit 2fprotein892Homo sapiensQ13200

22 more molecules are not listed.

Sequence of entity 1 (U), FASTA
>6MSE_1 26S proteasome non-ATPase regulatory subunit 1 (chains U)
MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA
ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE
GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS
LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED
NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSDSMETE
EKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV
RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL
QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLG
LGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQ
HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR
RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC
AGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDK
HDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLS
LAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSITAKAK
KKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQLLDNPARVMPAQLKVLTMPETCRY
QPFKPLSIGGIIILKDTSEDIEELVEPVAAHGPKIEEEEQEPEPPEPFEYIDD
Sequence of entity 2 (V), FASTA
>6MSE_2 26S proteasome non-ATPase regulatory subunit 3 (chains V)
KQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGKTAAAAAE
HSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVQGFF
TSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIFMMNSKRY
KEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLR
HDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLE
YSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYF
LLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLAD
IAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRIS
FCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP
Sequence of entity 3 (W), FASTA
>6MSE_3 26S proteasome non-ATPase regulatory subunit 12 (chains W)
MADGGSERADGRIVKMEVDYSATVDQRLPECAKLAKEGRLQEVIETLLSLEKQTRTASDM
VSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPI
KLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKK
ERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSY
LSICKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIP
KYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFGSTEEGEKRWKDLKNRVVE
HNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKD
PNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIHNLQ
Sequence of entity 4 (X), FASTA
>6MSE_4 26S proteasome non-ATPase regulatory subunit 11 (chains X)
MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT
GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE
KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL
SNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD
SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA
DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD
VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKK
LT
Sequence of entity 5 (Y), FASTA
>6MSE_5 26S proteasome non-ATPase regulatory subunit 6 (chains Y)
MPLENLEEEGLPKNPDLRIAQLRFLLSLPEHRGDAAVRDELMAAVRDNNMAPYYEALCKS
LDWQIDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGA
LTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRL
KVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKV
IKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAVVEQEMKKDWLFAPHYRYYVREMR
IHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPD
SKNWQYQETIKKGDLLLNRVQKLSRVINM
Sequence of entity 6 (Z), FASTA
>6MSE_6 26S proteasome non-ATPase regulatory subunit 7 (chains Z)
MPELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE
DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSV
LVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIK
DTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDV
SLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKEGQEKEESKKDR
KEDKEKDKDKEKSDVKKEEKKEKK
Sequence of entity 7 (a), FASTA
>6MSE_7 26S proteasome non-ATPase regulatory subunit 13 (chains a)
MKDVPGFLQQSQNSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY
ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA
LKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL
GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAF
NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA
KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDV
KSMEMLVEHQAHDILT
Sequence of entity 8 (b), FASTA
>6MSE_8 26S proteasome non-ATPase regulatory subunit 4 (chains b)
MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEV
LTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDN
EKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLA
DALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAA
ASAAEAGIATTGTEDSDDALLKMTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQGAEF
GQAESADIDASSAMDTSEPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLA
SQATKDGKKDKKEEDKK
Sequence of entity 9 (c), FASTA
>6MSE_9 26S proteasome non-ATPase regulatory subunit 14 (chains c)
DRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEF
VDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCW
LSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNL
GHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHN
ESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLA
AMLDTVVFK
Sequence of entity 10 (d), FASTA
>6MSE_10 26S proteasome non-ATPase regulatory subunit 8 (chains d)
FIKGRAPRAPPRERRRATRGGLRQVVAPPRALGSTSRPHFRRASVCRRRCRKSGGLLAAS
RKMAAAAVNGAAGFSSSGPAATSGAVLQAATGMYEQLKGEWNRKSPNLSKCGEELGRLKL
VLLELNFLPTTGTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQ
LPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSY
NKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTD
YAKKRGWVLGPNNYYSFASQQQKPEDTTIPSTELAKQVIEYARQLEMIV
Sequence of entity 11 (e), FASTA
>6MSE_11 26S proteasome complex subunit SEM1 (chains e)
MSEKKQPVDLGLLEEDDEFEEFPAEDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAEL
EKHGYKMETS
Sequence of entity 12 (f), FASTA
>6MSE_12 26S proteasome non-ATPase regulatory subunit 2 (chains f)
MEEGGRDKAPVQPQQSPAAAPGGTDEKPSGKERRDAGDKDKEQELSEEDKQLQDELEMLV
ERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKR
FAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKVQ
REPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYV
PEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGR
HGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGG
SGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLW
DVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLG
SIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQ
TIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAY
AGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALI
AMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPE
VSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCP
YHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPL
PVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTP

Ligands and cofactors

IDNameFormulaCopies
ZNZinc ionZn1
ATPAdenosine-5'-triphosphateC10 H16 N5 O13 P33
MGMagnesium ionMg3
ADPAdenosine-5'-diphosphateC10 H15 N5 O10 P22

Primary citation

Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome. Dong, Y., Zhang, S., Wu, Z. et al. Nature (2019) 565:49-55. DOI 10.1038/s41586-018-0736-4 · PubMed

Other PDB entries of the same protein (UniProt Q99460 (AlphaFold model), which also has an AlphaFold model), best resolution first:

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