6MSJ: 26S proteasome non-ATPase regulatory subunit 1
Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome. Determined by electron microscopy at 3.3 Å resolution. Released 21 Nov 2018.
- Method
- Electron microscopy
- Resolution
- 3.3 Å
- Organisms
- Homo sapiens, Saccharomyces cerevisiae RM11-1a
- Chains
- 47
- Atoms
- 105,316
- Mol. weight
- 1664.64 kDa
- Ligands
- ATP, ADP, MG, ZN
- Released
- 21 Nov 2018
Explore 6MSJ in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
6MSJ contains 577 α-helices and 541 β-strands across 47 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain a: 25 helices, 3 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 5-10 | 6 | |
| α-helix | 18 | 1 | |
| α-helix | 19-23 | 5 | |
| α-helix | 25-28 | 4 | |
| α-helix | 36-46 | 11 | |
| α-helix | 54-66 | 13 | |
| α-helix | 73-87 | 15 | |
| α-helix | 90-102 | 13 | |
| α-helix | 111-120 | 10 | |
| α-helix | 131-141 | 11 | |
| α-helix | 150-161 | 12 | |
| α-helix | 162-164 | 3 | |
| α-helix | 170-182 | 13 | |
| α-helix | 190-206 | 17 | |
| α-helix | 220-223 | 4 | |
| α-helix | 231-241 | 11 | |
| α-helix | 249-256 | 8 | |
| α-helix | 262-264 | 3 | |
| α-helix | 265-273 | 9 | |
| α-helix | 277-283 | 7 | |
| β-strand | 291-292 | 2 | 40 |
| α-helix | 293-299 | 7 | |
| α-helix | 304-306 | 3 | |
| α-helix | 307-317 | 11 | |
| β-strand | 323-324 | 2 | 40 |
| β-strand | 330-332 | 3 | 40 |
| α-helix | 344-370 | 27 | |
| α-helix | 372-375 | 4 | |
Chain A: 17 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 27-35 | 9 | |
| α-helix | 42-63 | 22 | |
| α-helix | 75-78 | 4 | |
| α-helix | 87-90 | 4 | |
| β-strand | 97-98 | 2 | 73 |
| β-strand | 100-103 | 4 | 74 |
| β-strand | 111-114 | 4 | 74 |
| β-strand | 120-123 | 4 | 74 |
| β-strand | 125 | 1 | 73 |
| β-strand | 139-142 | 4 | 73 |
| β-strand | 149-153 | 5 | 73 |
| α-helix | 174-176 | 3 | |
| α-helix | 181-187 | 7 | |
| α-helix | 188-192 | 5 | |
| α-helix | 193-196 | 4 | |
| α-helix | 200-204 | 5 | |
| β-strand | 212-215 | 4 | 75 |
| α-helix | 222-231 | 10 | |
| β-strand | 236-240 | 5 | 75 |
| α-helix | 253-264 | 12 | |
| β-strand | 270-274 | 5 | 75 |
| α-helix | 295-306 | 12 | |
| β-strand | 316-321 | 6 | 75 |
| α-helix | 329-332 | 4 | |
| β-strand | 339-342 | 4 | 75 |
| α-helix | 349-360 | 12 | |
| α-helix | 371-375 | 5 | |
| α-helix | 382-398 | 17 | |
| α-helix | 406-420 | 15 | |
Chain b: 6 helices, 10 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 4-9 | 6 | 45 |
| β-strand | 13 | 1 | 46 |
| α-helix | 14-16 | 3 | |
| α-helix | 25-43 | 19 | |
| β-strand | 48-52 | 5 | 45 |
| β-strand | 55 | 1 | 47 |
| β-strand | 65 | 1 | 45 |
| α-helix | 69-75 | 7 | |
| β-strand | 82 | 1 | 46 |
| β-strand | 84 | 1 | 47 |
| α-helix | 87-94 | 8 | |
| β-strand | 106-113 | 8 | 45 |
| α-helix | 121-132 | 12 | |
| β-strand | 137-142 | 6 | 45 |
| α-helix | 151-158 | 8 | |
| β-strand | 170-171 | 2 | 45 |
Chain B: 19 helices, 13 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 33-38 | 6 | |
| α-helix | 59-84 | 26 | |
| α-helix | 94-102 | 9 | |
| β-strand | 107-114 | 8 | 73 |
| β-strand | 120-124 | 5 | 73 |
| β-strand | 130-135 | 6 | 73 |
| β-strand | 149-152 | 4 | 73 |
| β-strand | 159-162 | 4 | 73 |
| α-helix | 163-164 | 2 | |
| α-helix | 169-173 | 5 | |
| β-strand | 175 | 1 | 80 |
| α-helix | 191-197 | 7 | |
| α-helix | 198-202 | 5 | |
| α-helix | 203-206 | 4 | |
| α-helix | 217-219 | 3 | |
| β-strand | 221-225 | 5 | 80 |
| α-helix | 232-241 | 10 | |
| β-strand | 247-251 | 5 | 80 |
| α-helix | 252-254 | 3 | |
| α-helix | 262-276 | 15 | |
| β-strand | 280-285 | 6 | 80 |
| α-helix | 287-289 | 3 | |
| α-helix | 302-316 | 15 | |
| β-strand | 325-330 | 6 | 80 |
| α-helix | 339-342 | 4 | |
| β-strand | 349-352 | 4 | 80 |
| α-helix | 360-368 | 9 | |
| β-strand | 374 | 1 | 81 |
| α-helix | 380-386 | 7 | |
| α-helix | 392-408 | 17 | |
| β-strand | 414 | 1 | 81 |
| α-helix | 416-427 | 12 | |
Chain c: 11 helices, 8 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 31-34 | 4 | 53 |
| α-helix | 35-47 | 13 | |
| β-strand | 54-60 | 7 | 53 |
| β-strand | 67-74 | 8 | 53 |
| α-helix | 76-78 | 3 | |
| α-helix | 89-100 | 12 | |
| β-strand | 107-114 | 8 | 53 |
| α-helix | 124-136 | 13 | |
| β-strand | 141-145 | 5 | 53 |
| β-strand | 157-162 | 6 | 53 |
| α-helix | 189-192 | 4 | |
| β-strand | 200-203 | 4 | 53 |
| β-strand | 205-208 | 4 | 53 |
| α-helix | 214-221 | 8 | |
| α-helix | 226-229 | 4 | |
| α-helix | 237-261 | 25 | |
| α-helix | 267-272 | 6 | |
| α-helix | 279-283 | 5 | |
| α-helix | 286-308 | 23 | |
Chain C: 17 helices, 13 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 14-16 | 3 | |
| α-helix | 17-21 | 5 | |
| α-helix | 22-66 | 45 | |
| α-helix | 69-70 | 2 | |
| β-strand | 71-76 | 6 | 73 |
| β-strand | 84-88 | 5 | 73 |
| β-strand | 94-99 | 6 | 73 |
| β-strand | 112-116 | 5 | 73 |
| β-strand | 122-127 | 6 | 73 |
| β-strand | 138 | 1 | 86 |
| α-helix | 155-170 | 16 | |
| α-helix | 173-178 | 6 | |
| α-helix | 181-183 | 3 | |
| β-strand | 185-188 | 4 | 86 |
| α-helix | 198-205 | 8 | |
| β-strand | 210-214 | 5 | 86 |
| β-strand | 223 | 1 | 87 |
| α-helix | 226-240 | 15 | |
| β-strand | 244-249 | 6 | 86 |
| α-helix | 269-279 | 11 | |
| β-strand | 289-294 | 6 | 86 |
| α-helix | 298-300 | 3 | |
| β-strand | 313-315 | 3 | 86 |
| α-helix | 318-320 | 3 | |
| α-helix | 322-332 | 11 | |
| α-helix | 344-349 | 6 | |
| α-helix | 359-372 | 14 | |
| α-helix | 380-390 | 11 | |
| α-helix | 400-404 | 5 | |
| β-strand | 405 | 1 | 88 |
Chain d: 14 helices, 2 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 17-29 | 13 | |
| α-helix | 46-64 | 19 | |
| α-helix | 68-81 | 14 | |
| α-helix | 95-108 | 14 | |
| α-helix | 112-118 | 7 | |
| α-helix | 119-121 | 3 | |
| α-helix | 131-142 | 12 | |
| α-helix | 148-153 | 6 | |
| α-helix | 164-182 | 19 | |
| β-strand | 188-189 | 2 | 59 |
| α-helix | 191-193 | 3 | |
| α-helix | 194-198 | 5 | |
| α-helix | 205-212 | 8 | |
| β-strand | 222-223 | 2 | 59 |
| α-helix | 224-226 | 3 | |
| α-helix | 240-253 | 14 | |
Chain D: 18 helices, 14 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 42-80 | 39 | |
| β-strand | 88-97 | 10 | 73 |
| β-strand | 100-105 | 6 | 73 |
| β-strand | 106 | 1 | 93 |
| β-strand | 108 | 1 | 93 |
| β-strand | 111-114 | 4 | 73 |
| α-helix | 121-123 | 3 | |
| β-strand | 129-132 | 4 | 73 |
| β-strand | 139-142 | 4 | 73 |
| α-helix | 143-144 | 2 | |
| α-helix | 164-166 | 3 | |
| α-helix | 171-177 | 7 | |
| α-helix | 178-182 | 5 | |
| α-helix | 183-186 | 4 | |
| α-helix | 188-194 | 7 | |
| β-strand | 201-205 | 5 | 94 |
| α-helix | 212-221 | 10 | |
| β-strand | 226-231 | 6 | 94 |
| α-helix | 242-256 | 15 | |
| β-strand | 260-265 | 6 | 94 |
| β-strand | 272 | 1 | 95 |
| α-helix | 273-274 | 2 | |
| α-helix | 282-297 | 16 | |
| β-strand | 305-311 | 7 | 94 |
| β-strand | 317 | 1 | 95 |
| α-helix | 319-322 | 4 | |
| β-strand | 329-332 | 4 | 94 |
| α-helix | 341-349 | 9 | |
| α-helix | 360-363 | 4 | |
| α-helix | 372-387 | 16 | |
| α-helix | 398-407 | 10 | |
| α-helix | 413-415 | 3 | |
31 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| 26S proteasome non-ATPase regulatory subunit 1 | U | protein | 953 | Homo sapiens | Q99460 (AlphaFold model) |
| 26S proteasome non-ATPase regulatory subunit 3 | V | protein | 533 | Homo sapiens | O43242 (AlphaFold model) |
| 26S proteasome non-ATPase regulatory subunit 12 | W | protein | 456 | Homo sapiens | O00232 (AlphaFold model) |
| 26S proteasome non-ATPase regulatory subunit 11 | X | protein | 422 | Homo sapiens | O00231 (AlphaFold model) |
| 26S proteasome non-ATPase regulatory subunit 6 | Y | protein | 389 | Homo sapiens | Q15008 |
| 26S proteasome non-ATPase regulatory subunit 7 | Z | protein | 324 | Homo sapiens | P51665 |
| 26S proteasome non-ATPase regulatory subunit 13 | a | protein | 376 | Homo sapiens | Q9UNM6 |
| 26S proteasome non-ATPase regulatory subunit 4 | b | protein | 377 | Homo sapiens | P55036 |
| 26S proteasome non-ATPase regulatory subunit 14 | c | protein | 309 | Homo sapiens | O00487 |
| 26S proteasome non-ATPase regulatory subunit 8 | d | protein | 349 | Homo sapiens | P48556 |
| 26S proteasome complex subunit SEM1 | e | protein | 70 | Homo sapiens | P60896 |
| 26S proteasome non-ATPase regulatory subunit 2 | f | protein | 892 | Homo sapiens | Q13200 |
22 more molecules are not listed.
Sequence of entity 1 (U), FASTA
>6MSJ_1 26S proteasome non-ATPase regulatory subunit 1 (chains U)
MITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFA
ALVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPE
GEKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS
LKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVKED
NLLMAYQICFDLYESASQQFLSSVIQNLRTVGTPIASVPGSTNTGTVPGSEKDSDSMETE
EKTSSAFVGKTPEASPEPKDQTLKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV
RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARATNWAKFTATASLGVIHKGHEKEAL
QLMATYLPKDTSPGSAYQEGGGLYALGLIHANHGGDIIDYLLNQLKNASNDIVRHGGSLG
LGLAAMGTARQDVYDLLKTNLYQDDAVTGEAAGLALGLVMLGSKNAQAIEDMVGYAQETQ
HEKILRGLAVGIALVMYGRMEEADALIESLCRDKDPILRRSGMYTVAMAYCGSGNNKAIR
RLLHVAVSDVNDDVRRAAVESLGFILFRTPEQCPSVVSLLSESYNPHVRYGAAMALGICC
AGTGNKEAINLLEPMTNDPVNYVRQGALIASALIMIQQTEITCPKVNQFRQLYSKVINDK
HDDVMAKFGAILAQGILDAGGHNVTISLQSRTGHTHMPSVVGVLVFTQFWFWFPLSHFLS
LAYTPTCVIGLNKDLKMPKVQYKSNCKPSTFAYPAPLEVPKEKEKEKVSTAVLSITAKAK
KKEKEKEKKEEEKMEVDEAEKKEEKEKKKEPEPNFQLLDNPARVMPAQLKVLTMPETCRY
QPFKPLSIGGIIILKDTSEDIEELVEPVAAHGPKIEEEEQEPEPPEPFEYIDD
Sequence of entity 2 (V), FASTA
>6MSJ_2 26S proteasome non-ATPase regulatory subunit 3 (chains V)
KQEGSARRRGADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTGEADGKTAAAAAE
HSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVQGFF
TSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIFMMNSKRY
KEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLR
HDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLE
YSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYF
LLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLAD
IAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRIS
FCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP
Sequence of entity 3 (W), FASTA
>6MSJ_3 26S proteasome non-ATPase regulatory subunit 12 (chains W)
MADGGSERADGRIVKMEVDYSATVDQRLPECAKLAKEGRLQEVIETLLSLEKQTRTASDM
VSTSRILVAVVKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPI
KLRLIDTLRMVTEGKIYVEIERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKK
ERVEFILEQMRLCLAVKDYIRTQIISKKINTKFFQEENTEKLKLKYYNLMIQLDQHEGSY
LSICKHYRAIYDTPCIQAESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIP
KYKDLLKLFTTMELMRWSTLVEDYGMELRKGSLESPATDVFGSTEEGEKRWKDLKNRVVE
HNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKD
PNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIHNLQ
Sequence of entity 4 (X), FASTA
>6MSJ_4 26S proteasome non-ATPase regulatory subunit 11 (chains X)
MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKT
GQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSE
KRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHAL
SNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYD
SIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLA
DFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKAD
VERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKK
LT
Sequence of entity 5 (Y), FASTA
>6MSJ_5 26S proteasome non-ATPase regulatory subunit 6 (chains Y)
MPLENLEEEGLPKNPDLRIAQLRFLLSLPEHRGDAAVRDELMAAVRDNNMAPYYEALCKS
LDWQIDVDLLNKMKKANEDELKRLDEELEDAEKNLGESEIRDAMMAKAEYLCRIGDKEGA
LTAFRKTYDKTVALGHRLDIVFYLLRIGLFYMDNDLITRNTEKAKSLIEEGGDWDRRNRL
KVYQGLYCVAIRDFKQAAELFLDTVSTFTSYELMDYKTFVTYTVYVSMIALERPDLREKV
IKGAEILEVLHSLPAVRQYLFSLYECRYSVFFQSLAVVEQEMKKDWLFAPHYRYYVREMR
IHAYSQLLESYRSLTLGYMAEAFGVGVEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPD
SKNWQYQETIKKGDLLLNRVQKLSRVINM
Sequence of entity 6 (Z), FASTA
>6MSJ_6 26S proteasome non-ATPase regulatory subunit 7 (chains Z)
MPELAVQKVVVHPLVLLSVVDHFNRIGKVGNQKRVVGVLLGSWQKKVLDVSNSFAVPFDE
DDKDDSVWFLDHDYLENMYGMFKKVNARERIVGWYHTGPKLHKNDIAINELMKRYCPNSV
LVIIDVKPKDLGLPTEAYISVEEVHDDGTPTSKTFEHVTSEIGAEEAEEVGVEHLLRDIK
DTTVGTLSQRITNQVHGLKGLNSKLLDIRSYLEKVATGKLPINHQIIYQLQDVFNLLPDV
SLQEFVKAFYLKTNDQMVVVYLASLIRSVVALHNLINNKIANRDAEKKEGQEKEESKKDR
KEDKEKDKDKEKSDVKKEEKKEKK
Sequence of entity 7 (a), FASTA
>6MSJ_7 26S proteasome non-ATPase regulatory subunit 13 (chains a)
MKDVPGFLQQSQNSGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLY
ENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGA
LKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFL
GCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAF
NSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSA
KITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDV
KSMEMLVEHQAHDILT
Sequence of entity 8 (b), FASTA
>6MSJ_8 26S proteasome non-ATPase regulatory subunit 4 (chains b)
MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLANDCEV
LTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDN
EKDLVKLAKRLKKEKVNVDIINFGEEEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGPSLA
DALISSPILAGEGGAMLGLGASDFEFGVDPSADPELALALRVSMEEQRQRQEEEARRAAA
ASAAEAGIATTGTEDSDDALLKMTISQQEFGRTGLPDLSSMTEEEQIAYAMQMSLQGAEF
GQAESADIDASSAMDTSEPAKEEDDYDVMQDPEFLQSVLENLPGVDPNNEAIRNAMGSLA
SQATKDGKKDKKEEDKK
Sequence of entity 9 (c), FASTA
>6MSJ_9 26S proteasome non-ATPase regulatory subunit 14 (chains c)
DRLLRLGGGMPGLGQGPPTDAPAVDTAEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEF
VDDYTVRVIDVFAMPQSGTGVSVEAVDPVFQAKMLDMLKQTGRPEMVVGWYHSHPGFGCW
LSGVDINTQQSFEALSERAVAVVVDPIQSVKGKVVIDAFRLINANMMVLGHEPRQTTSNL
GHLNKPSIQALIHGLNRHYYSITINYRKNELEQKMLLNLHKKSWMEGLTLQDYSEHCKHN
ESVVKEMLELAKNYNKAVEEEDKMTPEQLAIKNVGKQDPKRHLEEHVDVLMTSNIVQCLA
AMLDTVVFK
Sequence of entity 10 (d), FASTA
>6MSJ_10 26S proteasome non-ATPase regulatory subunit 8 (chains d)
FIKGRAPRAPPRERRRATRGGLRQVVAPPRALGSTSRPHFRRASVCRRRCRKSGGLLAAS
RKMAAAAVNGAAGFSSSGPAATSGAVLQAATGMYEQLKGEWNRKSPNLSKCGEELGRLKL
VLLELNFLPTTGTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQ
LPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSY
NKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTD
YAKKRGWVLGPNNYYSFASQQQKPEDTTIPSTELAKQVIEYARQLEMIV
Sequence of entity 11 (e), FASTA
>6MSJ_11 26S proteasome complex subunit SEM1 (chains e)
MSEKKQPVDLGLLEEDDEFEEFPAEDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAEL
EKHGYKMETS
Sequence of entity 12 (f), FASTA
>6MSJ_12 26S proteasome non-ATPase regulatory subunit 2 (chains f)
MEEGGRDKAPVQPQQSPAAAPGGTDEKPSGKERRDAGDKDKEQELSEEDKQLQDELEMLV
ERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMAPGENKR
FAADIISVLAMTMSGERECLKYRLVGSQEELASWGHEYVRHLAGEVAKEWQELDDAEKVQ
REPLLTLVKEIVPYNMAHNAEHEACDLLMEIEQVDMLEKDIDENAYAKVCLYLTSCVNYV
PEPENSALLRCALGVFRKFSRFPEALRLALMLNDMELVEDIFTSCKDVVVQKQMAFMLGR
HGVFLELSEDVEEYEDLTEIMSNVQLNSNFLALARELDIMEPKVPDDIYKTHLENNRFGG
SGSQVDSARMNLASSFVNGFVNAAFGQDKLLTDDGNKWLYKNKDHGMLSAAASLGMILLW
DVDGGLTQIDKYLYSSEDYIKSGALLACGIVNSGVRNECDPALALLSDYVLHNSNTMRLG
SIFGLGLAYAGSNREDVLTLLLPVMGDSKSSMEVAGVTALACGMIAVGSCNGDVTSTILQ
TIMEKSETELKDTYARWLPLGLGLNHLGKGEAIEAILAALEVVSEPFRSFANTLVDVCAY
AGSGNVLKVQQLLHICSEHFDSKEKEEDKDKKEKKDKDKKEAPADMGAHQGVAVLGIALI
AMGEEIGAEMALRTFGHLLRYGEPTLRRAVPLALALISVSNPRLNILDTLSKFSHDADPE
VSYNSIFAMGMVGSGTNNARLAAMLRQLAQYHAKDPNNLFMVRLAQGLTHLGKGTLTLCP
YHSDRQLMSQVAVAGLLTVLVSFLDVRNIILGKSHYVLYGLVAAMQPRMLVTFDEELRPL
PVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAHGERAELATEEFLPVTP
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ATP | Adenosine-5'-triphosphate | C10 H16 N5 O13 P3 | 4 |
| ADP | Adenosine-5'-diphosphate | C10 H15 N5 O10 P2 | 1 |
| MG | Magnesium ion | Mg | 4 |
| ZN | Zinc ion | Zn | 1 |
Primary citation
Cryo-EM structures and dynamics of substrate-engaged human 26S proteasome. Dong, Y., Zhang, S., Wu, Z. et al. Nature (2019) 565:49-55. DOI 10.1038/s41586-018-0736-4 · PubMed
Other PDB entries of the same protein (UniProt Q99460 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 5V1Y 1.42 Å, Crystal structure of the ternary RPN13 PRU-RPN2 (940-953)-ubiquitin complex
- 6OI4 1.76 Å, RPN13 (19-132)-RPN2 (940-952) pY950-Ub complex
- 5V1Z 2.0 Å, Crystal structure of the RPN13 PRU-RPN2 (932-953)-ubiquitin complex
- 9K53 2.5 Å, Structure of substrate-engaged human 26S proteasome RP-CP subcomplex in state ED2.1
- 8USD 2.7 Å, Rpn1/Nub1UBL-focused alignment of the non-substrate-engaged human 26S proteasome
- 8USB 2.73 Å, Non-substrate-engaged human 26S proteasome with Nub1/FAT10 bound to Rpn1
- 9MBP 2.75 Å, Substrate-engaged human 26S proteasome bound to midnolin with RPT1 at top of spiral…
- 9NKG 2.8 Å, Structure of substrate engaged MIDN-bound human 26S proteasome, EB-MIDN (Composite map)
- 9E8I 2.87 Å, Human proteasome in resting state conformation bound to TXNL1 in Forward conformation
- 9BV3 2.9 Å, M1B Midnolin-Proteasome
- 9E8H 2.9 Å, Human proteasome in resting state conformation bound to TXNL1 in backward conformation
- 9K4J 2.9 Å, Structure of substrate-engaged human 26S proteasome RP-CP subcomplex in state EA1.0
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