6QIK: Lsg1-TAP pre-60S ribosomal particles
Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles. Determined by electron microscopy at 3.1 Å resolution. Released 26 Jun 2019.
- Method
- Electron microscopy
- Resolution
- 3.1 Å
- Organism
- Saccharomyces cerevisiae
- Chains
- 47
- Atoms
- 128,569
- Mol. weight
- 2125.34 kDa
- Ligands
- ZN
- Released
- 26 Jun 2019
Explore 6QIK in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
6QIK contains 297 α-helices and 329 β-strands across 44 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain a: 2 helices, 1 β-strand
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-16 | 5 | |
| β-strand | 22 | 1 | 95 |
| α-helix | 37-54 | 18 | |
Chain b: 12 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 28-72 | 45 | |
| β-strand | 74-77 | 4 | 96 |
| α-helix | 78-81 | 4 | |
| β-strand | 83-88 | 6 | 1 |
| α-helix | 97-105 | 9 | |
| β-strand | 110 | 1 | 82 |
| β-strand | 113-118 | 6 | 1 |
| α-helix | 121-127 | 7 | |
| α-helix | 131-133 | 3 | |
| β-strand | 134-137 | 4 | 1 |
| α-helix | 142-150 | 9 | |
| β-strand | 153-156 | 4 | 2 |
| β-strand | 159-162 | 4 | 2 |
| α-helix | 167-173 | 7 | |
| α-helix | 174-176 | 3 | |
| α-helix | 181-189 | 9 | |
| α-helix | 195-201 | 7 | |
| β-strand | 202 | 1 | 2 |
| α-helix | 203-204 | 2 | |
| β-strand | 205-206 | 2 | 1 |
| β-strand | 221-222 | 2 | 3 |
| β-strand | 227-229 | 3 | 3 |
| β-strand | 230-231 | 2 | 1 |
| α-helix | 236-240 | 5 | |
Chain B: 6 helices, 16 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 6-9 | 4 | |
| α-helix | 29-31 | 3 | |
| α-helix | 34-37 | 4 | |
| β-strand | 40-50 | 11 | 4 |
| β-strand | 57-64 | 8 | 4 |
| β-strand | 71-77 | 7 | 4 |
| β-strand | 79 | 1 | 5 |
| β-strand | 83 | 1 | 6 |
| β-strand | 87-91 | 5 | 4 |
| β-strand | 101-103 | 3 | 4 |
| β-strand | 112-114 | 3 | 4 |
| β-strand | 134-140 | 7 | 4 |
| β-strand | 145-149 | 5 | 4 |
| β-strand | 155-159 | 5 | 4 |
| β-strand | 163-166 | 4 | 4 |
| β-strand | 169 | 1 | 5 |
| β-strand | 171 | 1 | 7 |
| α-helix | 174-176 | 3 | |
| α-helix | 182-189 | 8 | |
| α-helix | 201-203 | 3 | |
| β-strand | 224 | 1 | 8 |
| β-strand | 237 | 1 | 8 |
Chain c: 4 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 10-17 | 8 | |
| β-strand | 23-25 | 3 | 9 |
| α-helix | 27-34 | 8 | |
| β-strand | 41-44 | 4 | 9 |
| α-helix | 50-63 | 14 | |
| β-strand | 66-69 | 4 | 9 |
| α-helix | 74-81 | 8 | |
| β-strand | 89-92 | 4 | 9 |
Chain C: 12 helices, 16 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 9-10 | 2 | |
| α-helix | 33-36 | 4 | |
| α-helix | 40-41 | 2 | |
| β-strand | 42-43 | 2 | 10 |
| β-strand | 45-59 | 15 | 11 |
| β-strand | 71-80 | 10 | 11 |
| β-strand | 84-95 | 12 | 12 |
| β-strand | 98-106 | 9 | 12 |
| α-helix | 112-115 | 4 | |
| α-helix | 116-118 | 3 | |
| α-helix | 133-139 | 7 | |
| α-helix | 142-154 | 13 | |
| β-strand | 157-163 | 7 | 12 |
| α-helix | 176-177 | 2 | |
| β-strand | 178-182 | 5 | 12 |
| β-strand | 183-184 | 2 | 10 |
| α-helix | 188-197 | 10 | |
| β-strand | 202-203 | 2 | 12 |
| β-strand | 214-220 | 7 | 11 |
| β-strand | 225-227 | 3 | 13 |
| α-helix | 229-232 | 4 | |
| α-helix | 235-239 | 5 | |
| β-strand | 268-270 | 3 | 13 |
| β-strand | 274-286 | 13 | 11 |
| β-strand | 321-325 | 5 | 11 |
| β-strand | 335-340 | 6 | 11 |
| β-strand | 356-359 | 4 | 11 |
| α-helix | 373-380 | 8 | |
Chain d: 5 helices, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 9-15 | 7 | 14 |
| α-helix | 25-27 | 3 | |
| α-helix | 28-40 | 13 | |
| β-strand | 49-51 | 3 | 14 |
| α-helix | 53-59 | 7 | |
| α-helix | 60-62 | 3 | |
| β-strand | 70-79 | 10 | 14 |
| α-helix | 80 | 1 | |
| β-strand | 89-95 | 7 | 14 |
| β-strand | 107-108 | 2 | 14 |
Chain D: 22 helices, 11 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 5-9 | 5 | 15 |
| β-strand | 15-21 | 7 | 15 |
| α-helix | 22-23 | 2 | |
| α-helix | 25-27 | 3 | |
| α-helix | 32-42 | 11 | |
| α-helix | 47-49 | 3 | |
| β-strand | 62-63 | 2 | 16 |
| β-strand | 76-77 | 2 | 16 |
| β-strand | 88 | 1 | 16 |
| α-helix | 115-127 | 13 | |
| α-helix | 128-130 | 3 | |
| α-helix | 132-136 | 5 | |
| β-strand | 150-152 | 3 | 15 |
| α-helix | 154-157 | 4 | |
| α-helix | 162-171 | 10 | |
| α-helix | 175-182 | 8 | |
| β-strand | 186-187 | 2 | 17 |
| β-strand | 199-200 | 2 | 17 |
| β-strand | 206-209 | 4 | 15 |
| α-helix | 215-218 | 4 | |
| β-strand | 226-229 | 4 | 15 |
| α-helix | 235-238 | 4 | |
| α-helix | 240-242 | 3 | |
| β-strand | 248-251 | 4 | 15 |
| α-helix | 252-261 | 10 | |
| α-helix | 268-269 | 2 | |
| α-helix | 276-279 | 4 | |
| α-helix | 286-290 | 5 | |
| α-helix | 300-301 | 2 | |
| α-helix | 321-327 | 7 | |
| α-helix | 331-337 | 7 | |
| α-helix | 339-341 | 3 | |
| α-helix | 353-359 | 7 | |
Chain e: 8 helices, 3 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 18-19 | 2 | |
| α-helix | 50-53 | 4 | |
| α-helix | 55-57 | 3 | |
| α-helix | 58-60 | 3 | |
| β-strand | 66 | 1 | 18 |
| β-strand | 72-76 | 5 | 18 |
| α-helix | 79-82 | 4 | |
| α-helix | 83-85 | 3 | |
| β-strand | 92-96 | 5 | 18 |
| α-helix | 97 | 1 | |
| α-helix | 102-115 | 14 | |
36 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| 25S ribosomal RNA | A | RNA | 3396 | Saccharomyces cerevisiae | |
| 60S ribosomal protein L2-A | B | protein | 254 | Saccharomyces cerevisiae | P0CX45 (AlphaFold model) |
| 60S ribosomal protein L3 | C | protein | 387 | Saccharomyces cerevisiae | P14126 (AlphaFold model) |
| 60S ribosomal protein L4-A | D | protein | 362 | Saccharomyces cerevisiae | P10664 (AlphaFold model) |
| 60S ribosomal protein L11-A | E | protein | 174 | Saccharomyces cerevisiae | P0C0W9 (AlphaFold model) |
| 60S ribosomal protein L9-A | F | protein | 191 | Saccharomyces cerevisiae | P05738 |
| 60S ribosomal protein L6-A | G | protein | 176 | Saccharomyces cerevisiae | Q02326 |
| 60S ribosomal protein L8-A | H | protein | 256 | Saccharomyces cerevisiae | P17076 |
| 60S ribosomal protein L16-B | J | protein | 198 | Saccharomyces cerevisiae | P26785 |
| 60S ribosomal protein L13-A | K | protein | 199 | Saccharomyces cerevisiae | Q12690 |
| 60S ribosomal protein L23-A | L | protein | 137 | Saccharomyces cerevisiae | P0CX41 |
| 60S ribosomal protein L14-A | M | protein | 138 | Saccharomyces cerevisiae | P36105 |
35 more molecules are not listed.
Sequence of entity 1 (A), FASTA
>6QIK_1 25S ribosomal RNA (chains A)
GUUUGACCUCAAAUCAGGUAGGAGUACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGA
AAAGAAACCAACCGGGAUUGCCUUAGUAACGGCGAGUGAAGCGGCAAAAGCUCAAAUUUG
AAAUCUGGUACCUUCGGUGCCCGAGUUGUAAUUUGGAGAGGGCAACUUUGGGGCCGUUCC
UUGUCUAUGUUCCUUGGAACAGGACGUCAUAGAGGGUGAGAAUCCCGUGUGGCGAGGAGU
GCGGUUCUUUGUAAAGUGCCUUCGAAGAGUCGAGUUGUUUGGGAAUGCAGCUCUAAGUGG
GUGGUAAAUUCCAUCUAAAGCUAAAUAUUGGCGAGAGACCGAUAGCGAACAAGUACAGUG
AUGGAAAGAUGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUACGUGAAAUUGUUGAAAGG
GAAGGGCAUUUGAUCAGACAUGGUGUUUUGUGCCCUCUGCUCCUUGUGGGUAGGGGAAUC
UCGCAUUUCACUGGGCCAGCAUCAGUUUUGGUGGCAGGAUAAAUCCAUAGGAAUGUAGCU
UGCCUCGGUAAGUAUUAUAGCCUGUGGGAAUACUGCCAGCUGGGACUGAGGACUGCGACG
UAAGUCAAGGAUGCUGGCAUAAUGGUUAUAUGCCGCCCGUCUUGAAACACGGACCAAGGA
GUCUAACGUCUAUGCGAGUGUUUGGGUGUAAAACCCAUACGCGUAAUGAAAGUGAACGUA
GGUUGGGGCCUCGCAAGAGGUGCACAAUCGACCGAUCCUGAUGUCUUCGGAUGGAUUUGA
GUAAGAGCAUAGCUGUUGGGACCCGAAAGAUGGUGAACUAUGCCUGAAUAGGGUGAAGCC
AGAGGAAACUCUGGUGGAGGCUCGUAGCGGUUCUGACGUGCAAAUCGAUCGUCGAAUUUG
GGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCU
CAGGAUAGCAGAAGCUCGUAUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGAGGUUCCGGG
GUCGAAAUGACCUUGACCUAUUCUCAAACUUUAAAUAUGUAAGAAGUCCUUGUUACUUAA
UUGAACGUGGACAUUUGAAUGAAGAGCUUUUAGUGGGCCAUUUUUGGUAAGCAGAACUGG
CGAUGCGGGAUGAACCGAACGUAGAGUUAAGGUGCCGGAAUACACGCUCAUCAGACACCA
CAAAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAA
GGAGUGUGUAACAACUCACCGGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCUCAAGC
GUGUUACCUAUACUCUACCGUCAGGGUUGAUAUGAUGCCCUGACGAGUAGGCAGGCGUGG
AGGUCAGUGACGAAGCCUAGACCGUAAGGUCGGGUCGAACGGCCUCUAGUGCAGAUCUUG
GUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAAGUGGGGAAAGGUUCCACG
UCAACAGCAGUUGGACGUGGGUUAGUCGAUCCUAAGAGAUGGGGAAGCUCCGUUUCAAAG
GCCUGAUUUUAUGCAGGCCACCAUCGAAAGGGAAUCCGGUUAAGAUUCCGGAACCUGGAU
AUGGAUUCUUCACGGUAACGUAACUGAAUGUGGAGACGUCGGCGCGAGCCCUGGGAGGAG
UUAUCUUUUCUUCUUAACAGCUUAUCACCCCGGAAUUGGUUUAUCCGGAGAUGGGGUCUU
AUGGCUGGAAGAGGCCAGCACCUUUGCUGGCUCCGGUGCGCUUGUGACGGCCCGUGAAAA
UCCACAGGAAGGAAUAGUUUUCAUGCCAGGUCGUACUGAUAACCGCAGCAGGUCUCCAAG
GUGAACAGCCUCUAGUUGAUAGAAUAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGU
AACUUCGGGAUAAGGAUUGGCUCUAAGGGUCGGGUAGUGAGGGCCUUGGUCAGACGCAGC
GGGCGUGCUUGUGGACUGCUUGGUGGGGCUUGCUCUGCUAGGCGGACUACUUGCGUGCCU
UGUUGUAGACGGCCUUGGUAGGUCUCUUGUAGACCGUCGCUUGCUACAAUUAACGAUCAA
CUUAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUG
GUCAGAAAGUGAUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAA
GAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAA
AUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCU
AUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAG
AAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAU
AAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUUCUUUACUUAUUCAA
UGAAGCGGAGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAGGUCCCAUUCGGGGCUGA
UCCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAACGA
UAACGCAGAUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGG
UAAAAGCCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUC
GAUCCUUUAGUCCCUCGGAAUUUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAA
CUGGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAUGUCGGCU
CUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGA
ACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAAUGUUA
CCGCAAUAGUAAUUGAACUUAGUACGAGAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGC
GGCUGUCUGAUCAGGCAUUGCCGCGAAGCUACCAUCCGCUGGAUUAUGGCUGAACGCCUC
UAAGUCAGAAUCCAUGCUAGAACGCGGUGAUUUCUUUGCUCCACACAAUAUAGAUGGAUA
CGAAUAAGGCGUCCUUGUGGCGUCGCUGAACCAUAGCAGGCUAGCAACGGUGCACUUGGC
GGAAAGGCCUUGGGUGCUUGCUGGCGAAUUGCAAUGUCAUUUUGCGUGGGGAUAAAUCAU
UUGUAUACGACUUAGAUGUACAACGGGGUAUUGUAAGCAGUAGAGUAGCCUUGUUGUUAC
GAUCUGCUGAGAUUAAGCCUUUGUUGUCUGAUUUGU
Sequence of entity 2 (B), FASTA
>6QIK_2 60S ribosomal protein L2-A (chains B)
MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAK
VVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKP
GDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLL
KAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAA
RRTGLLRGSQKTQD
Sequence of entity 3 (C), FASTA
>6QIK_3 60S ribosomal protein L3 (chains C)
MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDL
DRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK
NWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVHTQIRKTPLAQKKAHLAE
IQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPR
KTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEANGATSFDR
TKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWID
TASKFGKGRFQTPAEKHAFMGTLKKDL
Sequence of entity 4 (D), FASTA
>6QIK_4 60S ribosomal protein L4-A (chains D)
MSRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQT
SAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRY
ATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLK
VLKSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAP
GAHLGRFVIWTEAAFTKLDQVWGSETVASSKVGYTLPSHIISTSDVTRIINSSEIQSAIR
PAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKAEKTGTKPAAVFTETLK
HD
Sequence of entity 5 (E), FASTA
>6QIK_5 60S ribosomal protein L11-A (chains E)
MSAKAQNPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIR
RNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIKYDPSI
GIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTTKEDTVSWFKQKYDADVLDK
Sequence of entity 6 (F), FASTA
>6QIK_6 60S ribosomal protein L9-A (chains F)
MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNG
GRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGD
KKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIY
VSHKGFITEDL
Sequence of entity 7 (G), FASTA
>6QIK_7 60S ribosomal protein L6-A (chains G)
MSAQKAPKWYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLED
NTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEAN
LFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF
Sequence of entity 8 (H), FASTA
>6QIK_8 60S ribosomal protein L8-A (chains H)
MAPGKKVAPAPFGAKSTKSNKTRNPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQR
QKKILSIRLKVPPTIAQFQYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGK
SKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIV
KGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGN
KAQAKMDKRAKNSDSA
Sequence of entity 9 (J), FASTA
>6QIK_9 60S ribosomal protein L16-B (chains J)
MSQPVVVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKA
TAFNKTRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVP
QALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAEYYAKKRAFTKKVSSA
SAAASESDVAKQLASFGY
Sequence of entity 10 (K), FASTA
>6QIK_10 60S ribosomal protein L13-A (chains K)
MAISKNLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPLDLLRPVVRA
PTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQ
SKIIVFPRNGKAPEAEQVLSAAATFPIAQPATDVEARAVQDNGESAFRTLRLARSEKKFR
GIREKRAREKAEAEAEKKK
Sequence of entity 11 (L), FASTA
>6QIK_11 60S ribosomal protein L23-A (chains L)
MSGNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMA
TVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGK
ECADLWPRVASNSGVVV
Sequence of entity 12 (M), FASTA
>6QIK_12 60S ribosomal protein L14-A (chains M)
MSTDSIVKASNWRLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINL
GQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERRAALTDFERFQV
MVLRKQKRYTVKKALAKA
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ZN | Zinc ion | Zn | 7 |
Primary citation
Mechanism of completion of peptidyltransferase centre assembly in eukaryotes. Kargas, V., Castro-Hartmann, P., Escudero-Urquijo, N. et al. Elife (2019) 8. DOI 10.7554/eLife.44904 · PubMed
Other PDB entries of the same protein (UniProt P0CX45 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 9PN5 1.75 Å, Composite map of hypomethylated 80S ribosome treated with hygromycin B
- 8CCS 1.97 Å, 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex
- 8CDR 2.04 Å, Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2…
- 8CEH 2.05 Å, Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2…
- 8P8N 2.15 Å, Mouse RPL39 integrated into the yeast 60S ribosomal subunit
- 8PFR 2.15 Å, Mouse RPL39L integrated into the yeast 60S ribosomal subunit
- 8EVT 2.2 Å, Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome…
- 8T2Y 2.2 Å, Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA,…
- 8P8U 2.23 Å, Yeast 60S ribosomal subunit
- 8CGN 2.28 Å, Non-rotated 80S S. cerevisiae ribosome with ligands
- 8ZHC 2.3 Å, pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- 7UOO 2.34 Å, Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state
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