6SV4: SDD1-stalled collided trisome
The cryo-EM structure of SDD1-stalled collided trisome. Determined by electron microscopy at 3.3 Å resolution. Released 4 Mar 2020.
- Method
- Electron microscopy
- Resolution
- 3.3 Å
- Organism
- Saccharomyces cerevisiae
- Chains
- 242
- Atoms
- 605,489
- Mol. weight
- 9522.69 kDa
- Released
- 4 Mar 2020
Explore 6SV4 in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
6SV4 contains 1,331 α-helices and 1,645 β-strands across 225 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain a: 3 helices, 8 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 2 | 1 | 287 |
| β-strand | 8 | 1 | 287 |
| β-strand | 16-17 | 2 | 288 |
| β-strand | 22-23 | 2 | 288 |
| β-strand | 32-37 | 6 | 289 |
| α-helix | 38 | 1 | |
| β-strand | 40 | 1 | 290 |
| β-strand | 43 | 1 | 290 |
| β-strand | 50-55 | 6 | 289 |
| α-helix | 57-62 | 6 | |
| α-helix | 65-76 | 12 | |
Chain A: 7 helices, 9 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 7-28 | 22 | |
| β-strand | 34-40 | 7 | 437 |
| β-strand | 47-52 | 6 | 437 |
| α-helix | 67-77 | 11 | |
| β-strand | 89 | 1 | 437 |
| α-helix | 94-96 | 3 | |
| α-helix | 98-109 | 12 | |
| α-helix | 115-128 | 14 | |
| β-strand | 133-140 | 8 | 438 |
| β-strand | 148-154 | 7 | 438 |
| α-helix | 163-166 | 4 | |
| β-strand | 169-176 | 8 | 438 |
| β-strand | 181-189 | 9 | 438 |
| β-strand | 208 | 1 | 439 |
| α-helix | 209-211 | 3 | |
| β-strand | 221-222 | 2 | 440 |
Chain AA: 15 helices, 6 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 47-49 | 3 | |
| β-strand | 51 | 1 | 194 |
| α-helix | 54-67 | 14 | |
| β-strand | 71 | 1 | 195 |
| α-helix | 73-76 | 4 | |
| α-helix | 84-94 | 11 | |
| α-helix | 102-114 | 13 | |
| α-helix | 127-129 | 3 | |
| α-helix | 136-144 | 9 | |
| β-strand | 151-153 | 3 | 196 |
| α-helix | 166-172 | 7 | |
| β-strand | 177-179 | 3 | 196 |
| α-helix | 183-190 | 8 | |
| β-strand | 197-198 | 2 | 196 |
| α-helix | 205-207 | 3 | |
| α-helix | 208-221 | 14 | |
| α-helix | 223-225 | 3 | |
| α-helix | 226-229 | 4 | |
| β-strand | 234 | 1 | 195 |
| α-helix | 240-247 | 8 | |
| α-helix | 248-252 | 5 | |
Chain ab: 3 helices, 10 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 2 | 1 | 514 |
| β-strand | 8 | 1 | 514 |
| β-strand | 15-16 | 2 | 515 |
| β-strand | 23-24 | 2 | 515 |
| β-strand | 32-33 | 2 | 516 |
| β-strand | 36-37 | 2 | 517 |
| α-helix | 38 | 1 | |
| β-strand | 40 | 1 | 518 |
| β-strand | 43 | 1 | 518 |
| β-strand | 50-51 | 2 | 517 |
| β-strand | 54-55 | 2 | 516 |
| α-helix | 57-62 | 6 | |
| α-helix | 65-75 | 11 | |
Chain Ab: 7 helices, 9 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 7-28 | 22 | |
| β-strand | 34-40 | 7 | 133 |
| β-strand | 46-52 | 7 | 133 |
| α-helix | 67-76 | 10 | |
| β-strand | 84-85 | 2 | 133 |
| β-strand | 89 | 1 | 133 |
| α-helix | 94-96 | 3 | |
| α-helix | 98-110 | 13 | |
| α-helix | 115-130 | 16 | |
| β-strand | 131-140 | 10 | 134 |
| β-strand | 148-154 | 7 | 134 |
| α-helix | 163-166 | 4 | |
| β-strand | 168-175 | 8 | 134 |
| β-strand | 182-190 | 9 | 134 |
| α-helix | 192-194 | 3 | |
| β-strand | 221-222 | 2 | 135 |
Chain AB: 3 helices, 15 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 17-18 | 2 | 109 |
| β-strand | 22-25 | 4 | 110 |
| β-strand | 27 | 1 | 111 |
| β-strand | 31 | 1 | 112 |
| β-strand | 33-39 | 7 | 110 |
| α-helix | 48-50 | 3 | |
| β-strand | 51-52 | 2 | 109 |
| β-strand | 57-61 | 5 | 110 |
| β-strand | 65 | 1 | 112 |
| β-strand | 74-80 | 7 | 110 |
| β-strand | 85-87 | 3 | 113 |
| β-strand | 91-94 | 4 | 113 |
| β-strand | 99-102 | 4 | 110 |
| β-strand | 114 | 1 | 111 |
| β-strand | 118 | 1 | 114 |
| α-helix | 120-125 | 6 | |
| α-helix | 127-132 | 6 | |
| β-strand | 136 | 1 | 114 |
Chain ac: 3 helices, 10 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 2 | 1 | 36 |
| β-strand | 8 | 1 | 36 |
| β-strand | 16-17 | 2 | 37 |
| α-helix | 18-20 | 3 | |
| β-strand | 22-23 | 2 | 37 |
| β-strand | 32-36 | 5 | 38 |
| β-strand | 40 | 1 | 39 |
| β-strand | 43 | 1 | 39 |
| β-strand | 47 | 1 | 40 |
| β-strand | 49 | 1 | 40 |
| β-strand | 51-55 | 5 | 38 |
| α-helix | 57-62 | 6 | |
| α-helix | 65-76 | 12 | |
Chain Ac: 8 helices, 9 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 7-28 | 22 | |
| β-strand | 34-40 | 7 | 210 |
| β-strand | 46-52 | 7 | 210 |
| α-helix | 55-58 | 4 | |
| α-helix | 66-77 | 12 | |
| β-strand | 84-86 | 3 | 210 |
| β-strand | 89 | 1 | 210 |
| α-helix | 94-96 | 3 | |
| α-helix | 98-111 | 14 | |
| α-helix | 115-129 | 15 | |
| β-strand | 133-140 | 8 | 211 |
| β-strand | 148-154 | 7 | 211 |
| α-helix | 163-166 | 4 | |
| β-strand | 168-175 | 8 | 211 |
| α-helix | 181 | 1 | |
| β-strand | 182-189 | 8 | 211 |
| β-strand | 221-222 | 2 | 212 |
215 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| 25S rRNA | BQ, YQ, ZQ | RNA | 3396 | Saccharomyces cerevisiae | |
| 5S rRNA | BR, YR, ZR | RNA | 121 | Saccharomyces cerevisiae | |
| 5.8S rRNA | BS, YS, ZS | RNA | 157 | Saccharomyces cerevisiae | |
| 60S ribosomal protein L2-A | AW, XW, zW | protein | 254 | Saccharomyces cerevisiae | P0CX45 (AlphaFold model) |
| 60S ribosomal protein L3 | BA, YA, ZA | protein | 387 | Saccharomyces cerevisiae | P14126 (AlphaFold model) |
| 60S ribosomal protein L4-A | BE, YE, ZE | protein | 362 | Saccharomyces cerevisiae | P10664 (AlphaFold model) |
| 60S ribosomal protein L5 | BI, YI, ZI | protein | 297 | Saccharomyces cerevisiae | P26321 (AlphaFold model) |
| 60S ribosomal protein L6-A | BM, YM, ZM | protein | 176 | Saccharomyces cerevisiae | Q02326 |
| 60S ribosomal protein L7-A | BO, YO, ZO | protein | 244 | Saccharomyces cerevisiae | P05737 |
| 60S ribosomal protein L8-A | AA, XA, zA | protein | 256 | Saccharomyces cerevisiae | P17076 |
| 60S ribosomal protein L9-A | AD, XD, zD | protein | 190 | Saccharomyces cerevisiae | P05738 |
| 60S ribosomal protein L10 | BD, YD, ZD | protein | 221 | Saccharomyces cerevisiae | P41805 |
70 more molecules are not listed.
Sequence of entity 1 (BQ, YQ, ZQ), FASTA
>6SV4_1 25S rRNA (chains BQ, YQ, ZQ)
GUUUGACCUCAAAUCAGGUAGGAGUACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGA
AAAGAAACCAACCGGGAUUGCCUUAGUAACGGCGAGUGAAGCGGCAAAAGCUCAAAUUUG
AAAUCUGGUACCUUCGGUGCCCGAGUUGUAAUUUGGAGAGGGCAACUUUGGGGCCGUUCC
UUGUCUAUGUUCCUUGGAACAGGACGUCAUAGAGGGUGAGAAUCCCGUGUGGCGAGGAGU
GCGGUUCUUUGUAAAGUGCCUUCGAAGAGUCGAGUUGUUUGGGAAUGCAGCUCUAAGUGG
GUGGUAAAUUCCAUCUAAAGCUAAAUAUUGGCGAGAGACCGAUAGCGAACAAGUACAGUG
AUGGAAAGAUGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUACGUGAAAUUGUUGAAAGG
GAAGGGCAUUUGAUCAGACAUGGUGUUUUGUGCCCUCUGCUCCUUGUGGGUAGGGGAAUC
UCGCAUUUCACUGGGCCAGCAUCAGUUUUGGUGGCAGGAUAAAUCCAUAGGAAUGUAGCU
UGCCUCGGUAAGUAUUAUAGCCUGUGGGAAUACUGCCAGCUGGGACUGAGGACUGCGACG
UAAGUCAAGGAUGCUGGCAUAAUGGUUAUAUGCCGCCCGUCUUGAAACACGGACCAAGGA
GUCUAACGUCUAUGCGAGUGUUUGGGUGUAAAACCCAUACGCGUAAUGAAAGUGAACGUA
GGUUGGGGCCUCGCAAGAGGUGCACAAUCGACCGAUCCUGAUGUCUUCGGAUGGAUUUGA
GUAAGAGCAUAGCUGUUGGGACCCGAAAGAUGGUGAACUAUGCCUGAAUAGGGUGAAGCC
AGAGGAAACUCUGGUGGAGGCUCGUAGCGGUUCUGACGUGCAAAUCGAUCGUCGAAUUUG
GGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCU
CAGGAUAGCAGAAGCUCGUAUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGAGGUUCCGGG
GUCGAAAUGACCUUGACCUAUUCUCAAACUUUAAAUAUGUAAGAAGUCCUUGUUACUUAA
UUGAACGUGGACAUUUGAAUGAAGAGCUUUUAGUGGGCCAUUUUUGGUAAGCAGAACUGG
CGAUGCGGGAUGAACCGAACGUAGAGUUAAGGUGCCGGAAUACACGCUCAUCAGACACCA
CAAAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAA
GGAGUGUGUAACAACUCACCGGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCUCAAGC
GUGUUACCUAUACUCUACCGUCAGGGUUGAUAUGAUGCCCUGACGAGUAGGCAGGCGUGG
AGGUCAGUGACGAAGCCUAGACCGUAAGGUCGGGUCGAACGGCCUCUAGUGCAGAUCUUG
GUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAAGUGGGGAAAGGUUCCACG
UCAACAGCAGUUGGACGUGGGUUAGUCGAUCCUAAGAGAUGGGGAAGCUCCGUUUCAAAG
GCCUGAUUUUAUGCAGGCCACCAUCGAAAGGGAAUCCGGUUAAGAUUCCGGAACCUGGAU
AUGGAUUCUUCACGGUAACGUAACUGAAUGUGGAGACGUCGGCGCGAGCCCUGGGAGGAG
UUAUCUUUUCUUCUUAACAGCUUAUCACCCCGGAAUUGGUUUAUCCGGAGAUGGGGUCUU
AUGGCUGGAAGAGGCCAGCACCUUUGCUGGCUCCGGUGCGCUUGUGACGGCCCGUGAAAA
UCCACAGGAAGGAAUAGUUUUCAUGCCAGGUCGUACUGAUAACCGCAGCAGGUCUCCAAG
GUGAACAGCCUCUAGUUGAUAGAAUAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGU
AACUUCGGGAUAAGGAUUGGCUCUAAGGGUCGGGUAGUGAGGGCCUUGGUCAGACGCAGC
GGGCGUGCUUGUGGACUGCUUGGUGGGGCUUGCUCUGCUAGGCGGACUACUUGCGUGCCU
UGUUGUAGACGGCCUUGGUAGGUCUCUUGUAGACCGUCGCUUGCUACAAUUAACGAUCAA
CUUAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUG
GUCAGAAAGUGAUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAA
GAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAA
AUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCU
AUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAG
AAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAU
AAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUUCUUUACUUAUUCAA
UGAAGCGGAGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAGGUCCCAUUCGGGGCUGA
UCCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAACGA
UAACGCAGAUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGG
UAAAAGCCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUC
GAUCCUUUAGUCCCUCGGAAUUUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAA
CUGGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAUGUCGGCU
CUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGA
ACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAAUGUUA
CCGCAAUAGUAAUUGAACUUAGUACGAGAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGC
GGCUGUCUGAUCAGGCAUUGCCGCGAAGCUACCAUCCGCUGGAUUAUGGCUGAACGCCUC
UAAGUCAGAAUCCAUGCUAGAACGCGGUGAUUUCUUUGCUCCACACAAUAUAGAUGGAUA
CGAAUAAGGCGUCCUUGUGGCGUCGCUGAACCAUAGCAGGCUAGCAACGGUGCACUUGGC
GGAAAGGCCUUGGGUGCUUGCUGGCGAAUUGCAAUGUCAUUUUGCGUGGGGAUAAAUCAU
UUGUAUACGACUUAGAUGUACAACGGGGUAUUGUAAGCAGUAGAGUAGCCUUGUUGUUAC
GAUCUGCUGAGAUUAAGCCUUUGUUGUCUGAUUUGU
Sequence of entity 2 (BR, YR, ZR), FASTA
>6SV4_2 5S rRNA (chains BR, YR, ZR)
GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUG
GUAAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUC
U
Sequence of entity 3 (BS, YS, ZS), FASTA
>6SV4_3 5.8S rRNA (chains BS, YS, ZS)
AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAU
ACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCC
UUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUU
Sequence of entity 4 (AW, XW, zW), FASTA
>6SV4_4 60S ribosomal protein L2-A (chains AW, XW, zW)
MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAK
VVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKP
GDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLL
KAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAA
RRTGLLRGSQKTQD
Sequence of entity 5 (BA, YA, ZA), FASTA
>6SV4_5 60S ribosomal protein L3 (chains BA, YA, ZA)
MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDL
DRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK
NWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVHTQIRKTPLAQKKAHLAE
IQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPR
KTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEANGATSFDR
TKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWID
TASKFGKGRFQTPAEKHAFMGTLKKDL
Sequence of entity 6 (BE, YE, ZE), FASTA
>6SV4_6 60S ribosomal protein L4-A (chains BE, YE, ZE)
MSRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQT
SAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRY
ATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLK
VLKSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAP
GAHLGRFVIWTEAAFTKLDQVWGSETVASSKVGYTLPSHIISTSDVTRIINSSEIQSAIR
PAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKAEKTGTKPAAVFTETLK
HD
Sequence of entity 7 (BI, YI, ZI), FASTA
>6SV4_7 60S ribosomal protein L5 (chains BI, YI, ZI)
MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDI
ICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYK
GVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRF
PGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIY
TSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ
Sequence of entity 8 (BM, YM, ZM), FASTA
>6SV4_8 60S ribosomal protein L6-A (chains BM, YM, ZM)
MSAQKAPKWYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLED
NTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEAN
LFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF
Sequence of entity 9 (BO, YO, ZO), FASTA
>6SV4_9 60S ribosomal protein L7-A (chains BO, YO, ZO)
MAAEKILTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAER
NIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVT
KATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILS
IDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLV
KSMN
Sequence of entity 10 (AA, XA, zA), FASTA
>6SV4_10 60S ribosomal protein L8-A (chains AA, XA, zA)
MAPGKKVAPAPFGAKSTKSNKTRNPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQR
QKKILSIRLKVPPTIAQFQYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGK
SKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIV
KGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGN
KAQAKMDKRAKNSDSA
Sequence of entity 11 (AD, XD, zD), FASTA
>6SV4_11 60S ribosomal protein L9-A (chains AD, XD, zD)
MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNG
GRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGD
KKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIY
VSHKGFITED
Sequence of entity 12 (BD, YD, ZD), FASTA
>6SV4_12 60S ribosomal protein L10 (chains BD, YD, ZD)
MARRPARCYRYQKNKPYPKSRYNRAVPDSKIRIYDLGKKKATVDEFPLCVHLVSNELEQL
SSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWG
KPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPE
YLKKREAGEVKDDGAFVKFLSKKGSLENNIREFPEYFAAQA
Primary citation
RQT complex dissociates ribosomes collided on endogenous RQC substrate SDD1. Matsuo, Y., Tesina, P., Nakajima, S. et al. Nat Struct Mol Biol (2020) 27:323-332. DOI 10.1038/s41594-020-0393-9 · PubMed
Other PDB entries of the same protein (UniProt P0CX45 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 9PN5 1.75 Å, Composite map of hypomethylated 80S ribosome treated with hygromycin B
- 8CCS 1.97 Å, 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex
- 8CDR 2.04 Å, Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2…
- 8CEH 2.05 Å, Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2…
- 8P8N 2.15 Å, Mouse RPL39 integrated into the yeast 60S ribosomal subunit
- 8PFR 2.15 Å, Mouse RPL39L integrated into the yeast 60S ribosomal subunit
- 8EVT 2.2 Å, Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome…
- 8T2Y 2.2 Å, Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA,…
- 8P8U 2.23 Å, Yeast 60S ribosomal subunit
- 8CGN 2.28 Å, Non-rotated 80S S. cerevisiae ribosome with ligands
- 8ZHC 2.3 Å, pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- 7UOO 2.34 Å, Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state
Browse structure collections
About this viewer
MolViewer shows 6SV4 directly in your browser with nothing to install. Switch between cartoon, ball-and-stick, spacefill and surface views, color by chain, secondary structure or B-factor, measure distances, angles and dihedrals, and share or embed the view.