6V92: Rsc-ncp

Rsc-ncp. Determined by electron microscopy at 20.0 Å resolution. Released 15 Jan 2020.

Method
Electron microscopy
Resolution
20.0 Å
Organisms
Saccharomyces cerevisiae (strain ATCC 204508 / S288c), synthetic construct, Homo sapiens
Chains
35
Atoms
44,583
Mol. weight
1430.23 kDa
Ligands
ZN
Released
15 Jan 2020

Explore 6V92 in 3D Show helices and sheets RCSB PDB PDBe

Secondary structure: helices and β-sheets

6V92 contains 243 α-helices and 148 β-strands across 33 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.

Chain 2: 0 helices, 1 β-strand

ElementResiduesLengthSheet
β-strand348127
Chain 3: 1 helix, 0 β-strands
ElementResiduesLengthSheet
α-helix3-1917
Chain 4: 1 helix, 0 β-strands
ElementResiduesLengthSheet
α-helix1-1717
Chain 5: 1 helix, 0 β-strands
ElementResiduesLengthSheet
α-helix4-1512
Chain 6: 1 helix, 0 β-strands
ElementResiduesLengthSheet
α-helix421-43313
Chain 7: 0 helices, 4 β-strands
ElementResiduesLengthSheet
β-strand24-31843
β-strand37-40443
β-strand52-56544
β-strand61-65544
Chain a: 5 helices, 2 β-strands
ElementResiduesLengthSheet
α-helix41-422
α-helix45-5612
α-helix64-7613
β-strand83-8429
α-helix86-11328
β-strand118-119210
α-helix121-13010
Chain A: 24 helices, 19 β-strands
ElementResiduesLengthSheet
β-strand8-1251
β-strand16-2161
β-strand29-3241
β-strand34-3742
β-strand47-4822
α-helix51-599
β-strand66-6942
β-strand7113
β-strand7713
α-helix80-9314
β-strand104-10851
α-helix116-1249
α-helix125-1306
β-strand135-14061
α-helix141-1477
β-strand154-15964
β-strand164-17074
β-strand173-17424
α-helix176-1783
β-strand180-18124
α-helix186-19712
α-helix198-2003
α-helix217-2259
α-helix227-2348
α-helix243-26119
α-helix283-2853
β-strand287-29265
α-helix293-2953
β-strand297-30265
α-helix303-31412
α-helix316-3183
α-helix325-3273
α-helix329-33810
α-helix381-3888
β-strand392-39544
α-helix397-4004
α-helix404-41512
β-strand423-42424
α-helix429-4335
α-helix435-44410
α-helix449-4513
β-strand454-45631
α-helix457-4637

25 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.

Molecules and chains

MoleculeChainsTypeLengthOrganismUniProt
Actin-related protein 7Aprotein477Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Q12406 (AlphaFold model)
Nuclear protein STH1/NPS1Rprotein1359Saccharomyces cerevisiae (strain ATCC 204508 / S288c)P32597 (AlphaFold model)
Actin-like protein ARP9Bprotein467Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Q05123 (AlphaFold model)
Regulator of Ty1 transposition protein 102Pprotein157Saccharomyces cerevisiae (strain ATCC 204508 / S288c)P53330 (AlphaFold model)
High temperature lethal protein 1Cprotein78Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Q9URQ5
Chromatin structure-remodeling complex protein RSC14Dprotein180Saccharomyces cerevisiae (strain ATCC 204508 / S288c)P38210
Chromatin structure-remodeling complex subunit RSC7Eprotein435Saccharomyces cerevisiae (strain ATCC 204508 / S288c)P32832
Chromatin structure-remodeling complex subunit RSC2Fprotein889Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Q06488
Chromatin structure-remodeling complex protein RSC3Gprotein885Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Q06639
Chromatin structure-remodeling complex subunit RSC4Hprotein625Saccharomyces cerevisiae (strain ATCC 204508 / S288c)Q02206
Chromatin structure-remodeling complex protein RSC8I, J, K, Lprotein557Saccharomyces cerevisiae (strain ATCC 204508 / S288c)P43609
Chromatin structure-remodeling complex protein RSC6Mprotein483Saccharomyces cerevisiae (strain ATCC 204508 / S288c)P25632

14 more molecules are not listed.

Sequence of entity 1 (A), FASTA
>6V92_1 Actin-related protein 7 (chains A)
MTLNRKCVVIHNGSHRTVAGFSNVELPQCIIPSSYIKRTDEGGEAEFIFGTYNMIDAAAE
KRNGDEVYTLVDSQGLPYNWDALEMQWRYLYDTQLKVSPEELPLVITMPATNGKPDMAIL
ERYYELAFDKLNVPVFQIVIEPLAIALSMGKSSAFVIDIGASGCNVTPIIDGIVVKNAVV
RSKFGGDFLDFQVHERLAPLIKEENDMENMADEQKRSTDVWYEASTWIQQFKSTMLQVSE
KDLFELERYYKEQADIYAKQQEQLKQMDQQLQYTALTGSPNNPLVQKKNFLFKPLNKTLT
LDLKECYQFAEYLFKPQLISDKFSPEDGLGPLMAKSVKKAGASINSMKANTSTNPNGLGT
SHINTNVGDNNSTASSSNISPEQVYSLLLTNVIITGSTSLIEGMEQRIIKELSIRFPQYK
LTTFANQVMMDRKIQGWLGALTMANLPSWSLGKWYSKEDYETLKRDRKQSQATNATN
Sequence of entity 2 (R), FASTA
>6V92_2 Nuclear protein STH1/NPS1 (chains R)
MLQEQSELMSTVMNNTPTTVAALAAVAAASETNGKLGSEEQPEITIPKPRSSAQLEQLLY
RYRAIQNHPKENKLEIKAIEDTFRNISRDQDIYETKLDTLRKSIDKGFQYDEDLLNKHLV
ALQLLEKDTDVPDYFLDLPDTKNDNTTAIEVDYSEKKPIKISADFNAKAKSLGLESKFSN
ATKTALGDPDTEIRISARISNRINELERLPANLGTYSLDDCLEFITKDDLSSRMDTFKIK
ALVELKSLKLLTKQKSIRQKLINNVASQAHHNIPYLRDSPFTAAAQRSVQIRSKVIVPQT
VRLAEELERQQLLEKRKKERNLHLQKINSIIDFIKERQSEQWSRQERCFQFGRLGASLHN
QMEKDEQKRIERTAKQRLAALKSNDEEAYLKLLDQTKDTRITQLLRQTNSFLDSLSEAVR
AQQNEAKILHGEEVQPITDEEREKTDYYEVAHRIKEKIDKQPSILVGGTLKEYQLRGLEW
MVSLYNNHLNGILADEMGLGKTIQSISLITYLYEVKKDIGPFLVIVPLSTITNWTLEFEK
WAPSLNTIIYKGTPNQRHSLQHQIRVGNFDVLLTTYEYIIKDKSLLSKHDWAHMIIDEGH
RMKNAQSKLSFTISHYYRTRNRLILTGTPLQNNLPELWALLNFVLPKIFNSAKTFEDWFN
TPFANTGTQEKLELTEEETLLIIRRLHKVLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSG
LQQQLYQQMLKHNALFVGAGTEGATKGGIKGLNNKIMQLRKICNHPFVFDEVEGVVNPSR
GNSDLLFRVAGKFELLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGS
TKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDR
AHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVIQAGKFDNKSTAEEQEAFLRR
LIESETNRDDDDKAELDDDELNDTLARSADEKILFDKIDKERMNQERADAKAQGLRVPPP
RLIQLDELPKVFREDIEEHFKKEDSEPLGRIRQKKRVYYDDGLTEEQFLEAVEDDNMSLE
DAIKKRREARERRRLRQNGTKENEIETLENTPEASETSLIENNSFTAAVDEETNADKETT
ASRSKRRSSRKKRTISIVTAEDKENTQEESTSQENGGAKVEEEVKSSSVEIINGSESKKK
KPKLTVKIKLNKTTVLENNDGKRAEEKPESKSPAKKTAAKKTKTKSKSLGIFPTVEKLVE
EMREQLDEVDSHPRTSIFEKLPSKRDYPDYFKVIEKPMAIDIILKNCKNGTYKTLEEVRQ
ALQTMFENARFYNEEGSWVYVDADKLNEFTDEWFKEHSS
Sequence of entity 3 (B), FASTA
>6V92_3 Actin-like protein ARP9 (chains B)
MAPFRQDSILIIYPRSQTTLVQFGLNEETFTVPELEIPTQIYRTTRQDGSYTYHSTNKDN
KAELIKPIQNGEIIDISAFTQFLRLIFVSILSDRANKNQDAFEAELSNIPLLLITHHSWS
QSDLEIITQYVFESLEINNLIQLPASLAATYSMISLQNCCIIDVGTHHTDIIPIVDYAQL
DHLVSSIPMGGQSINDSLKKLLPQWDDDQIESLKKSPIFEVLSDDAKKLSSFDFGNENED
EDEGTLNVAEIITSGRDTREVLEERERGQKVKNVKNSDLEFNTFWDEKGNEIKVGKQRFQ
GCNNLIKNISNRVGLTLDNIDDINKAKAVWENIIIVGGTTSISGFKEALLGQLLKDHLII
EPEEEKSKREEEAKSVLPAATKKKSKFMTNSTAFVPTIEYVQCPTVIKLAKYPDYFPEWK
KSGYSEIIFLGAQIVSKQIFTHPKDTFYITREKYNMKGPAALWDVQF
Sequence of entity 4 (P), FASTA
>6V92_4 Regulator of Ty1 transposition protein 102 (chains P)
MDPQTLITKANKVSYYGNPTSKESWRYDWYQPSKVSSNVQQPQQQLGDMENNLEKYPFRY
KTWLRNQEDEKNLQRESCEDILDLKEFDRRILKKSLMTSHTKGDTSKATGAPSANQGDEA
LSVDDIRGAVGNSEAIPGLSAGVNNDNTKESKDVKMN
Sequence of entity 5 (C), FASTA
>6V92_5 High temperature lethal protein 1 (chains C)
MSQNNTISSMNPERAYNNVTLKNLTAFQLLSQRENICELLNLVESTERHNSIINPERQRM
SLEEMKKMLDALKNERKK
Sequence of entity 6 (D), FASTA
>6V92_6 Chromatin structure-remodeling complex protein RSC14 (chains D)
MSGSNMGYYDVLAGLSALEKSSQVVFSATELQQLTQQSHATDKGIEGSENSKAKVSKPKR
VAVHGYLGGKVSLADAAQVEYEVGHSLLGSYVPRQQLEALSSVDFSHHFHRTLECKAALE
THDVFLAGAGQLSLPFQSHIESPRNSEAKRKRKVIICKRCQSRFIGSHRRSQLREHACVD
Sequence of entity 7 (E), FASTA
>6V92_7 Chromatin structure-remodeling complex subunit RSC7 (chains E)
MSDSEGGLASEVEHEKRSRSTSNRPNYAIDTEDLDIDENDENEDDDYREEEANEGVNEEE
ISDEEEQINKSGRNKRRHVDEEEDLSEDKGVTRSRNRSKFKKPVFPGIDDAEENLNPLKV
VNEEYVLPDDPEGETKITADGDLLGGREFLVRTFTLTEKGNRKFMLATEPARIVGFRDSY
LFFQTHPNLYKFILNQTQKNDLIDRGVLPYSYRNRQIALVTARGVFKEFGAKIIRGGKHI
TDDYYASELRTKGNVIEGKLAGDPIDKSARALETMMYPASENGINPAKNQVEFFEHRPHG
HMSNSNIIASGSKLSSTNWLYQHSAACSRFNSDLFYDRVKVLLVDQQGLRDAYTNILHIP
ESTQSTTVLGWRRSKNDSPSDTSIVYETVIHDNDLNKPKTGLSEIPKEIYEDVVDEDVLR
AITEQQNFEKCNEYI
Sequence of entity 8 (F), FASTA
>6V92_8 Chromatin structure-remodeling complex subunit RSC2 (chains F)
MMPDDNSNSSTQNSSALYKDLRKEYESLFTLKEDSGLEISPIFNVLPPKKDYPDYYAVIK
NPVSFNTLKKRIPHYTDAQQFMNDVVQIPWNAKTYNTRDSGIYKYALVLEKYLKDTIYPN
LKEKYPQLVYPDLGPLPDEPGYEEFQQKLREKAEEVARANAARAESSSSMNSTEAARRLR
KTRTSVKRESEPGTDTNNDEDYEATDMDIDNPKDADFPDLIRKPLININPYTRKPLRDNR
STTPSHSGTPQPLGPRHRQVSRTQVKRGRPPIIDLPYIQRMKNVMKVLKKEVLDSGIGLT
DLFERLPDRHRDANYYIMIANPISLQDINKKVKTRRYKTFQEFQNDFNLMLTNFRISHRG
DPESIKISNILEKTFTSLARFELSKPDRSFIPEGELRYPLDEVIVNNISYHVGDWALLRN
QNDPQKPIVGQIFRLWKTPDGKQWLNACWYYRPEQTVHRVDRLFYKNEVMKTGQYRDHLV
SNLVGKCYVIHFTRYQRGNPDMKLEGPLFVCEFRYNESDKIFNKIRTWKACLPEEIRDLD
EATIPVNGRKFFKYPSPIRHLLPANATPHDRVPEPTMGSPDAPPLVGAVYMRPKMQRDDL
GEYATSDDCPRYIIRPNDSPEEGQVDIETGTITTNTPTANALPKTGYSSSKLSSLRYNRS
SMSLENQNAIGQQQIPLSRVGSPGAGGPLTVQGLKQHQLQRLQQQQHQYQQQKRSQASRY
NIPTIIDDLTSQASRGNLGNIMIDAASSFVLPISITKNVDVLQRTDLHSQTKRSGREEMF
PWKKTKGEILWFRGPSVIVNERIINSGDPHLSLPLNRWFTTNKKRKLEYEEVEETMEDVT
GKDKDDDGLEPDVENEKESLPGPFVLGLRPSAKFTAHRLSMLRPPSSSS
Sequence of entity 9 (G), FASTA
>6V92_9 Chromatin structure-remodeling complex protein RSC3 (chains G)
MDIRGRKMKKPPACVQCRKRKIGCDRVKPICGNCMKHNKMDCFYPDVPGQYVPSSSSSSN
TRQVANGPYLNSYYASRRVSKETAALLQKNPELASLEQIREYNTRLQLLNAQNQLNNRSS
AANATLNQQHTQYIPKSVPSLESKPVTSANESSTPLNWVQGPAIFHMLTSPYTQDEIINH
EMNFLKGRLLELQEITGKKITGVNLDLKQDSSAQMQSSHSNRNQEEFLTIKKRKLSEDGV
TDGDGKPIPESERRPHLNEFKDLDPQFLDTNKVFNVFNSAISEEGRNRLWLLPKNINKSS
IFQIQYLIERDPFLFKFFNDLNILIETQFNGPLHDLVASRNSIERNSGISQILKFPSQSI
TQTLINKYLSTITETNSILPILKPKRLLPIVEQLFPSNTINKPNSKDFETIFQVFSVTND
QLLNLGFITLCLLILFESLNSTVLIPLRDDEHLQLFNVLFNYLPLLKSNLTTLRFEIEKR
SMCNIETLRFISLWKYYQFVMDTSSSSSFVIDYDEDMHMACLLSLNHETQNQSHILTWNF
IFKNYCWRHLFLGQLPLLMSEPFTNSTPIIDPLLNNDFELIDFEVNLMKYLQSKDQQLSI
DKIIQLIKLLKNKNIEVSQGCLTTPSIINNIMDSLIYRNSMLYLNFYLLLQFETLKNYAK
FNEILEDFLELSRETLFFVFSNLANIKFAGHEFTFINKSIVVLQTLVLMLLALYQRSFDS
SKRTNDANEISEQTDIHSNNDNSKRIKNKNVIHLIINKIAMLLSDYTKNCKKQNKLIENL
IIKIKTISKYIKNLEENKVTTSADSNYSINNGFSGISAEQLIKLNHELSKISESLIKTDF
YEQRKNSTVSNGVLGAAAPVDSDANSDTFGLTKENFNEVFEAIRS
Sequence of entity 10 (H), FASTA
>6V92_10 Chromatin structure-remodeling complex subunit RSC4 (chains H)
MVVKKRKLATEAGGSDERPKYLPGKHPKNQEKTPHVDYNAPLNPKSELFLDDWHIPKFNR
FISFTLDVLIDKYKDIFKDFIKLPSRKFHPQYYYKIQQPMSINEIKSRDYEYEDGPSNFL
LDVELLTKNCQAYNEYDSLIVKNSMQVVMLIEFEVLKAKNLKRNYLINSEVKAKLLHYLN
KLVDATEKKINQALLGASSPKNLDDKVKLSEPFMELVDKDELPEYYEIVHSPMALSIVKQ
NLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNYFNYLIQKEFFPELQDL
NERGEINLEFDKFEFENYLAIGGGGPAAAGALAISALDNDIEPESNREDLIDQADYDFNH
FEGLGNGYNRSLLTEDYLLNPNNFKKLIAKPETVQSEVKNERSTTSDIEKTNSLESEHLK
IPKYNVIKSMQKEMQSLSEQHTMEYKPYKLIQQIYIFSSKNLYSQATKPLLGSRPSCNQN
WVEYIFNGNELSQNENAFSFMLQPMQTFLTLQSHLTSSLKDTETLLTINKEPVKSRTSNV
NSNLSQPQQQENDVIGNDTKQDIENLTIGGGNNNDIVGNDNDKRNNITEIFDIRLSEGLN
HLMFRCEDKISHETEFMNFWINVLP
Sequence of entity 11 (I, J, K, L), FASTA
>6V92_11 Chromatin structure-remodeling complex protein RSC8 (chains I, J, K, L)
MSDTEKDKDVPMVDSHEATEEPPTTSTNTPSFPHLAQEQAKEESATLGAEVAHKKINYEQ
EAQKLEEKALRFLAKQTHPVIIPSFASWFDISKIHEIEKRSNPDFFNDSSRFKTPKAYKD
TRNFIINTYRLSPYEYLTITAVRRNVAMDVASIVKIHAFLEKWGLINYQIDPRTKPSLIG
PSFTGHFQVVLDTPQGLKPFLPENVIKQEVEGGDGAEPQVKKEFPVNLTIKKNVYDSAQD
FNALQDESRNSRQIHKVYICHTCGNESINVRYHNLRARDTNLCSRCFQEGHFGANFQSSD
FIRLENNGNSVKKNWSDQEMLLLLEGIEMYEDQWEKIADHVGGHKRVEDCIEKFLSLPIE
DNYIREVVGSTLNGKGGDSRDGSVSGSKLMECVNDAVQTLLQGDDKLGKVSDKSREISEK
YIEESQAIIQELVKLTMEKLESKFTKLCDLETQLEMEKLKYVKESEKMLNDRLSLSKQIL
DLNKSLEELNVSKKLVLISEQVDSGIQLVEKDQEGDDEDGNTATGHGVKRVGKEGEEVGE
GDSIAKLQPQVYKPWSL
Sequence of entity 12 (M), FASTA
>6V92_12 Chromatin structure-remodeling complex protein RSC6 (chains M)
MVTQTNPVPVTYPTDAYIPTYLPDDKVSNLADLKKLIEMDSRLDLYLTRRRLDTSINLPT
NTKTKDHPPNKEMLRIYVYNTTESSPRSDSGTPADSGKTTWTLRIEGKLLHESANGKHPF
SEFLEGVAVDFKRLKPLGMGKKRKRDSSLSLPLNLQQPEYNDQDSTMGDNDNGEDEDSAE
AESREEIVDALEWNYDENNVVEFDGIDIKRQGKDNLRCSITIQLRGVDGGKVQYSPNLAT
LIGMQTGSVNDAVYSIYKYILINNLFVTEQTEAQDGSNDAEDSSNENNNKNGAGDDDGVE
GSTPKDKPELGEVKLDSLLQKVLDTNAAHLPLMNVVQTVNKLVSPLPPIILDYTIDLSKD
TTYGATTLDVDVSHILHQPQPQPNLQKEEETDAEDTAKLREITKLALQLNSSAQKYQFFH
ELSLHPRETLTHYLWSSKQNELVLQGDQYFNEDAARTSDIYSNNNNDRSLMGNISLLYSQ
GRL

Ligands and cofactors

IDNameFormulaCopies
ZNZinc ionZn1

Primary citation

Architecture of the chromatin remodeler RSC and insights into its nucleosome engagement. Patel, A.B., Moore, C.M., Greber, B.J. et al. Elife (2019) 8. DOI 10.7554/eLife.54449 · PubMed

Other PDB entries of the same protein (UniProt Q12406 (AlphaFold model), which also has an AlphaFold model), best resolution first:

Browse structure collections

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