7OBR: RNC-SRP early complex
RNC-SRP early complex. Determined by electron microscopy at 2.8 Å resolution. Released 21 Jul 2021.
- Method
- Electron microscopy
- Resolution
- 2.8 Å
- Organisms
- Canis lupus familiaris, Oryctolagus cuniculus, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
- Chains
- 53
- Atoms
- 146,701
- Mol. weight
- 2355.43 kDa
- Ligands
- MG, ZN, GDP
- Released
- 21 Jul 2021
Explore 7OBR in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
7OBR contains 358 α-helices and 321 β-strands across 49 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain a: 8 helices, 6 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-5 | 3 | |
| α-helix | 7-9 | 3 | |
| α-helix | 42-48 | 7 | |
| β-strand | 72-74 | 3 | 7 |
| α-helix | 75-77 | 3 | |
| α-helix | 79-81 | 3 | |
| α-helix | 84-88 | 5 | |
| β-strand | 100-102 | 3 | 8 |
| α-helix | 103-106 | 4 | |
| β-strand | 110-112 | 3 | 7 |
| β-strand | 123-126 | 4 | 8 |
| β-strand | 128-129 | 2 | 7 |
| α-helix | 131-140 | 10 | |
| β-strand | 143-146 | 4 | 8 |
Chain A: 12 helices, 17 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-5 | 3 | |
| α-helix | 9-12 | 4 | |
| α-helix | 28-32 | 5 | |
| α-helix | 34-37 | 4 | |
| β-strand | 40-49 | 10 | 9 |
| α-helix | 50-51 | 2 | |
| β-strand | 58-64 | 7 | 9 |
| β-strand | 71-77 | 7 | 9 |
| α-helix | 78 | 1 | |
| β-strand | 79 | 1 | 10 |
| β-strand | 83 | 1 | 11 |
| β-strand | 87-91 | 5 | 9 |
| β-strand | 101-103 | 3 | 9 |
| α-helix | 108 | 1 | |
| β-strand | 112-114 | 3 | 9 |
| β-strand | 116 | 1 | 12 |
| β-strand | 126 | 1 | 12 |
| β-strand | 134-140 | 7 | 9 |
| α-helix | 142-144 | 3 | |
| β-strand | 145-149 | 5 | 9 |
| β-strand | 155-159 | 5 | 9 |
| β-strand | 163-166 | 4 | 9 |
| α-helix | 168 | 1 | |
| β-strand | 169 | 1 | 10 |
| α-helix | 174-176 | 3 | |
| α-helix | 182-190 | 9 | |
| α-helix | 201-203 | 3 | |
| β-strand | 224-225 | 2 | 13 |
| β-strand | 237-238 | 2 | 13 |
Chain b: 3 helices, 0 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 12-18 | 7 | |
| α-helix | 37-48 | 12 | |
| α-helix | 54-75 | 22 | |
Chain B: 16 helices, 24 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 9-10 | 2 | |
| α-helix | 14-16 | 3 | |
| α-helix | 32-35 | 4 | |
| α-helix | 40-41 | 2 | |
| β-strand | 42-43 | 2 | 14 |
| β-strand | 45-54 | 10 | 15 |
| β-strand | 57-59 | 3 | 16 |
| β-strand | 60 | 1 | 17 |
| β-strand | 68 | 1 | 17 |
| β-strand | 71-73 | 3 | 16 |
| β-strand | 76-80 | 5 | 15 |
| α-helix | 82-83 | 2 | |
| β-strand | 84-94 | 11 | 18 |
| β-strand | 99-106 | 8 | 18 |
| α-helix | 112-117 | 6 | |
| α-helix | 133-138 | 6 | |
| α-helix | 140-156 | 17 | |
| β-strand | 159-165 | 7 | 18 |
| α-helix | 177-179 | 3 | |
| β-strand | 180-184 | 5 | 18 |
| β-strand | 185-186 | 2 | 14 |
| α-helix | 190-199 | 10 | |
| β-strand | 204-205 | 2 | 18 |
| α-helix | 207-209 | 3 | |
| β-strand | 216-222 | 7 | 15 |
| α-helix | 223-224 | 2 | |
| β-strand | 225-229 | 5 | 19 |
| α-helix | 231-234 | 4 | |
| α-helix | 237-241 | 5 | |
| β-strand | 270-273 | 4 | 19 |
| β-strand | 276-288 | 13 | 15 |
| β-strand | 293 | 1 | 20 |
| β-strand | 297 | 1 | 20 |
| α-helix | 300-302 | 3 | |
| β-strand | 320 | 1 | 21 |
| β-strand | 324 | 1 | 21 |
| β-strand | 330-334 | 5 | 15 |
| β-strand | 344-349 | 6 | 15 |
| β-strand | 365-367 | 3 | 16 |
| α-helix | 382-389 | 8 | |
Chain c: 4 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 14-24 | 11 | |
| β-strand | 26-29 | 4 | 22 |
| α-helix | 31-40 | 10 | |
| β-strand | 45-48 | 4 | 22 |
| α-helix | 54-67 | 14 | |
| β-strand | 70-73 | 4 | 22 |
| α-helix | 78-84 | 7 | |
| β-strand | 93-98 | 6 | 22 |
Chain C: 25 helices, 13 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 7-9 | 3 | 23 |
| α-helix | 10 | 1 | |
| β-strand | 11 | 1 | 24 |
| β-strand | 12-13 | 2 | 25 |
| β-strand | 15 | 1 | 25 |
| β-strand | 21-23 | 3 | 23 |
| α-helix | 24-25 | 2 | |
| α-helix | 26-29 | 4 | |
| α-helix | 31-32 | 2 | |
| α-helix | 34-44 | 11 | |
| β-strand | 64-66 | 3 | 26 |
| β-strand | 77-79 | 3 | 26 |
| α-helix | 117-130 | 14 | |
| α-helix | 134-139 | 6 | |
| β-strand | 152-154 | 3 | 24 |
| α-helix | 156-160 | 5 | |
| α-helix | 164-173 | 10 | |
| α-helix | 177-185 | 9 | |
| β-strand | 188-189 | 2 | 27 |
| α-helix | 190-191 | 2 | |
| α-helix | 193-197 | 5 | |
| β-strand | 201-202 | 2 | 27 |
| β-strand | 208-211 | 4 | 24 |
| α-helix | 217-220 | 4 | |
| β-strand | 228-231 | 4 | 24 |
| α-helix | 232-234 | 3 | |
| α-helix | 237-240 | 4 | |
| α-helix | 242-244 | 3 | |
| β-strand | 250-253 | 4 | 24 |
| α-helix | 254-263 | 10 | |
| α-helix | 279-282 | 4 | |
| α-helix | 289-293 | 5 | |
| α-helix | 296-299 | 4 | |
| α-helix | 303-305 | 3 | |
| α-helix | 312-317 | 6 | |
| α-helix | 322-328 | 7 | |
| α-helix | 331-337 | 7 | |
| α-helix | 341-362 | 22 | |
Chain d: 3 helices, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 22-28 | 7 | 28 |
| α-helix | 38-40 | 3 | |
| α-helix | 42-56 | 15 | |
| β-strand | 61-64 | 4 | 28 |
| α-helix | 66-73 | 8 | |
| β-strand | 83-90 | 8 | 28 |
| β-strand | 103-109 | 7 | 28 |
| β-strand | 121-122 | 2 | 28 |
Chain D: 18 helices, 9 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 10-14 | 5 | |
| α-helix | 21-25 | 5 | |
| α-helix | 30-37 | 8 | |
| α-helix | 38-40 | 3 | |
| β-strand | 50-55 | 6 | 29 |
| β-strand | 60-66 | 7 | 29 |
| β-strand | 73-79 | 7 | 29 |
| α-helix | 80-82 | 3 | |
| α-helix | 83-86 | 4 | |
| α-helix | 95-113 | 19 | |
| α-helix | 132-135 | 4 | |
| α-helix | 139-142 | 4 | |
| β-strand | 143 | 1 | 30 |
| β-strand | 145-147 | 3 | 29 |
| α-helix | 158-169 | 12 | |
| β-strand | 172 | 1 | 30 |
| β-strand | 181 | 1 | 31 |
| β-strand | 183-184 | 2 | 31 |
| β-strand | 189-190 | 2 | 31 |
| α-helix | 194-199 | 6 | |
| α-helix | 202-214 | 13 | |
| α-helix | 216-222 | 7 | |
| α-helix | 224-227 | 4 | |
| α-helix | 228-230 | 3 | |
| α-helix | 236-249 | 14 | |
| α-helix | 269-272 | 4 | |
| α-helix | 273-291 | 19 | |
41 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| Srp RNA | 1 | RNA | 249 | Canis lupus familiaris | |
| 28S rRNA | 5 | RNA | 3493 | Oryctolagus cuniculus | |
| 5S ribosomal RNA | 7 | RNA | 120 | Oryctolagus cuniculus | |
| 5.8S ribosomal RNA | 8 | RNA | 156 | Oryctolagus cuniculus | |
| 60S ribosomal protein L8 | A | protein | 245 | Oryctolagus cuniculus | A0A5F9D5B2 (AlphaFold model) |
| uL3 | B | protein | 402 | Oryctolagus cuniculus | G1TL06 (AlphaFold model) |
| 60S ribosomal protein L4 | C | protein | 413 | Oryctolagus cuniculus | G1SVW5 (AlphaFold model) |
| 60S ribosomal protein L5 | D | protein | 297 | Oryctolagus cuniculus | P19949 (AlphaFold model) |
| 60S ribosomal protein L6 | E | protein | 248 | Oryctolagus cuniculus | G1SKF7 |
| uL30 | F | protein | 225 | Oryctolagus cuniculus | G1SV32 |
| 60S ribosomal protein L7a | G | protein | 319 | Oryctolagus cuniculus | G1STW0 |
| 60S ribosomal protein L9 | H | protein | 192 | Oryctolagus cuniculus | G1SWI6 |
41 more molecules are not listed.
Sequence of entity 1 (1), FASTA
>7OBR_1 SRP RNA (chains 1)
GCCGGGCGCGGUGGCGCGCGCCUGUAGUCCCAGCUACUCGGGAGGCUGAGGCAGGAGGAU
CGCUUCGCUAUGCCGAUCGGGUGUCCGCACUAAGUUCGGCAUCAAUAUGGUGACCUCCCG
GGAGCGGGGGACCACCAGGUUGCCUAAGGAGGGGUGAACCGGCCCAGGUCGGAAACGGAG
CAGGUCAAAACUCCCGUGCUGAUCAGUAGUGGGAUCGCGCCUGUGAAUAGCCUAGCGAGA
CCCCGUCUC
Sequence of entity 2 (5), FASTA
>7OBR_2 28S rRNA (chains 5)
CGCGACCUCAGAUCAGACGUGGCGACCCGCUGAAUUUAAGCAUAUUAGUCAGCGGAGGAG
AAGAAACUAACCAGGAUUCCCUCAGUAACGGCGAGUGAACAGGGAAGAGCCCAGCGCCGA
AUCCCCGCCCCGCGGCGGGGCGCGGGACAUGUGGCGUACGGAAGACCCGCUCCCCGGCGC
CGCUCGUGGGGGGCCCAAGUCCUUCUGAUCGAGGCCCAGCCCGUGGACGGUGUGAGGCCG
GUAGCGGCCCCCGGCGCGCCGGGCCCGGGUCUUCCCGGAGUCGGGUUGCUUGGGAAUGCA
GCCCAAAGCGGGUGGUAAACUCCAUCUAAGGCUAAAUACCGGCACGAGACCGAUAGUCAA
CAAGUACCGUAAGGGAAAGUUGAAAAGAACUUUGAAGAGAGAGUUCAAGAGGGCGUGAAA
CCGUUAAGAGGUAAACGGGUGGGGUCCGCGCAGUCCGCCCGGUUCAACCCGGCGGCGGGU
CCGGCCGUGUCGGCGGGUCCCCCGACCGGCGACCGGCCGCCGCCGGGCGCAUUUCCACCG
CGGCGGUGCGCCGCGACCGGCUCCGGGACGGCUGGGAAGGCCCGGCGGGGAAGGUGGCUC
GGCCGAGUGUUACAGCCCCCCCGGCAGCAGCACUCGCCGAAUCCCGGGGCCGAGGGAGCG
AGACCCGUCGCCGCGCUCUCCCCCCUCGGGGGGGCCGGGCCACCCCUCCCACGGCGCGAC
CGCUCGGGGCGGACUGUCCCCAGUGCGCCCCGGGCGGGUCGCGCCGUCGGGCCCGGGGGA
GGGGCCACGCGGCGAGCGCACGGGGUCGGCGGCGACGUCGGCUACCCACCCGACCCGUCU
UGAAACACGGACCAAGGAGUCUAACACGUGCGCGAGUCGGGGGCUCGCACGAAAGCCGCC
GUGGCGCAAUGAAGGUGAAGGCCGGCGCGCUCGCCGGCCGAGGUGGGAUCCCGAGGCCUC
UCCAGUCCGCCGAGGGCGCACCACCGGCCCGUCUCGCCCGCCGCGCCGGGGAGGUGGAGC
ACGAGCGCACGUGUUAGGACCCGAAAGAUGGUGAACUAUGCCUGGGCAGGGCGAAGCCAG
AGGAAACUCUGGUGGAGGUCCGUAGCGGUCCUGACGUGCAAAUCGGUCGUCCGACCUGGG
UAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCCUCCGAAGUUUCCCUCA
GGAUAGCUGGCGCUCUCGCACACGCAGUUUUAUCCGGUAAAGCGAAUGAUUAGAGGUCUU
GGGGCCGAAACGAUCUCAACCUAUUCUCAAACUUUAAAUGGGUAAGAAGCCCGGCUCGCU
GGCGUGAGCCGGGCGUGGAAUGGAGUGCCUAGUGGGCCACUUUUGGUAAGCAGAACUGGC
GCUGCGGGAUGAACCGAACGCCGGGUUAAGGCGCCCGAUGCCGACGCUCAUCAGACCCCA
GAAAAGGUGUUGGUUGAUAUAGAGCCGAAUCAACUAGCCCUGAAAAUGGAUGGCGCUGGA
GCGUCGGGCCCAUACCCGGCCGUCGCCGGCAGUCGAGAGUGGACGGGAGCCCGCCCCCGG
AGCCCCGCGGACGCUACGCCGCGACGAGUAGGAGGGCCGCUGCGGUGAGCCUUGAAGCCU
AGGGCGCGGGCCCGGGUGGAGCCGCCGCAGGUGCAGAUCUUGGUGGUAGUAGCAAAUAUU
CAAACGAGAACUUUGAAGGCCGAAGUGGAGAAGGGUUCCAUGUGAACAGCAGUUGAACAU
GGGUCAGUCGGUCCUGAGAGAUGGGCGAGCGCCGUUCCGAAGGGACGGGCGAUGGCCUCC
GUUGCCCUCGGCCGAUCGAAAGGGAGUCGGGUUCAGAUCCCCGAAUCCGGAGUGGCGGAG
AUGGGCGCCGCGAGGCGUCCAGUGCGGUAACGCGACCGAUCCCGGAGAAGCCGGCGGGAG
CCCCGGGGAGAGUUCUCUUUUCUUUGUGAAGGGCAGGGCGCCCUGGAAUGGGUUCGCCCC
GAGAGAGGGGCCCGUGCCUUGGAAAGCGUCGCGGUUCCGGCGGCGUCCGGUGAGCUCUCG
CUGGCCCUUGAAAAUCCGGGGGAGAGGGUGUAAAUCUCGCGCCGGGCCGUACCCAUAUCC
GCAGCAGGUCUCCAAGGUGAACAGCCUCUGGCAUGUUGGAACAAUGUAGGUAAGGGAAGU
CGGCAAGCCGGAUCCGUAACUUCGGGAUAAGGAUUGGCUCUAAGGGCUGGGUCGGUCGUC
GGCCGGCGCCUAGCAGCCGACUUAGAACUGGUGCGGACCAGGGGAAUCCGACUGUUUAAU
UAAAACAAAGCAUCGCGAAGGCCCGCGGCGGGUGUUGACGCGAUGUGAUUUCUGCCCAGU
GCUCUGAAUGUCAAAGUGAAGAAAUUCAAUGAAGCGCGGGUAAACGGCGGGAGUAACUAU
GACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUGA
ACGAGAUUCCCACUGUCCCUACCUACUAUCCAGCGAAACCACAGCCAAGGGAACGGGCUU
GGCGGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUCUGGCACGGUGAAG
AGACAUGUUUUUUCACUGACCCGGUGAGGCGGGGGGGCGCUCGCUUCUGGCGCCAAGCGC
CCGGCCGCGCGCCGGCCGGGCGCGACCCGCUCCGGGGACAGUGCCAGGUGGGGAGUUUGA
CUGGGGCGGUACACCUGUCAAACGGUAACGCAGGUGUCCUAAGGCGAGCUCAGGGAGGAC
AGAAACCUCCCGUGGAGCAGAAGGGCAAAAGCUCGCUUGAUCUUGAUUUUCAGUACGAAU
ACAGACCGUGAAAGCGGGGCCUCACGAUCCUUCUGACCUUUUGGGUUUUAAGCAGGAGGU
GUCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCGGCCAAGCGUUCAUAGCGACGUC
GCUUUUUGAUCCUUCGAUGUCGGCUCUUCCUAUCAUUGUGAAGCAGAAUUCACCAAGCGU
UGGAUUGUUCACCCACUAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUU
AGUUUUACCCUACUGAUGAUGUGUUGUUGCCAUGGUAAUCCUGCUCAGUACGAGAGGAAC
CGCAGGUUCAGACAUUUGGUGUAUGUGCUUGGCUGAGGAGCCAAUGGGGCGAAGCUACCA
UCUGUGGGAUUAUGACUGAACGCCUCUAAGUCAGAAUCCCGCCCAGGCGGAACGAUACGG
CAGCGCCGCGGAGCCUCGGUUGGCCUCGGAUAGCCGGUCCCCCGCGGGGUCCGGUGCGGA
GUGCCCUUCGUCCUGGGAAACGGGGCGCGGCCGGAGAGGCGGCCGCCCCCUCGCCCGUCA
CGCACGCCGUUCGUGGGGAACCUGGCGCUAAACCAUUCGUAGACGACCUGCUUCUGGGUC
GGGGUUUCGUACGUAGCAGAGCAGCUCCCUCGCUGCGAUCUAUUGAAAGUCAGCCCUCGA
CACAAGGGUUUGU
Sequence of entity 3 (7), FASTA
>7OBR_3 5S ribosomal RNA (chains 7)
GUCUACGGCCAUACCACCCUGAACGCGCCCGAUCUCGUCUGAUCUCGGAAGCUAAGCAGG
GUCGGGCCUGGUUAGUACUUGGAUGGGAGACCGCCUGGGAAUACCGGGUGCUGUAGGCUU
Sequence of entity 4 (8), FASTA
>7OBR_4 5.8S ribosomal RNA (chains 8)
CGACUCUUAGCGGUGGAUCACUCGGCUCGUGCGUCGAUGAAGAACGCAGCUAGCUGCGAG
AAUUAAUGUGAAUUGCAGGACACAUUGAUCAUCGACACUUCGAACGCACUUGCGGCCCCG
GGUUCCUCCCGGGGCUACGCCUGUCUGAGCGUCGCU
Sequence of entity 5 (A), FASTA
>7OBR_5 60S ribosomal protein L8 (chains A)
MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK
VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLPVGTMPEGTIVCCLEEKP
GDRGKLARASGNYATVISHNPETKKTRVKLPSGSKKVISSANRAVVGVVAGGGRIDKPIL
KAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLIAA
RRTGR
Sequence of entity 6 (B), FASTA
>7OBR_6 uL3 (chains B)
SHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVD
RPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN
WHKSKKKAFTKYCKKWQDDAGKRQLDKDFSSMKKYCQVIRVLAHTQMRLLPLRQKKAHLM
EIQVNGGTVAEKLDWARERLEQQVPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLP
RKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKN
NASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALE
KIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDRIAKEEGA
Sequence of entity 7 (C), FASTA
>7OBR_7 60S ribosomal protein L4 (chains C)
MACARPLISVYSEKGESSGKNVTLPAVFKAPIRPDIVNFVHTNLRKNNRQPYAVSELAGH
QTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRRWHRRVNTTQK
RYAICSALAASALPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKKLKAWNDI
KKVYASQRMRAGKGKMRNRRRIQRRGPCVIYNEDNGIVKAFRNIPGITLLNVTKLNILKL
APGGHVGRFCIWTESAFRKLDDLYGTWRKAASLKSNYNLPMHKMLNTDLSRILKSPEIQR
ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQARNHKLRVERAAAALAA
KSDPKEAPAKKKPVVGKKKKPVVGRKAAAAKKPAADKKAADKRAGPEDKKPAA
Sequence of entity 8 (D), FASTA
>7OBR_8 60S ribosomal protein L5 (chains D)
MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDI
ICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYE
GQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRF
PGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMY
KKAHAAIRENPVYEKKPKREVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAES
Sequence of entity 9 (E), FASTA
>7OBR_9 60S ribosomal protein L6 (chains E)
PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYAAPKSRIERKKKREKVLATVTKPVGGDK
NGGTRVVKLRKMPRYYPTEDVPRKLLSHGRKPFSQHVRKLRASITPGTILIILTGRHRGK
RVVFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPKHLTDAYFKKK
QLRKPRHQEGEIFDTEKEKYEITEQRKVDQKAVDSQILPKIKAVPQLQGYLRSVFALTNG
VYPHKLVF
Sequence of entity 10 (F), FASTA
>7OBR_10 uL30 (chains F)
NFAELKIKRLRKKFAQKMLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYV
PAEPKLAFVIRIRGINGVSPKVRKVLQLLRLRQIFNGTFVKLNKASINMLRIVEPYIAWG
YPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKE
ANNFLWPFKLSSPRGGMKKKTTHFVEGEDAGNREDQINRLIRRMN
Sequence of entity 11 (G), FASTA
>7OBR_11 60S ribosomal protein L7a (chains G)
MSSYRLGYCMKEERHNLVLCLWSQSPGILNSKCLWPFTNIHLLVGALPREGAGGAWGGGR
SEQLPTCSTTHHDFTWDKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQR
AILYKRLKVPPAINQFTQVLDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGD
VPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCILKGK
ARLCRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGNVLGPKSV
ARIAKLEKAKAKELATKLG
Sequence of entity 12 (H), FASTA
>7OBR_12 60S ribosomal protein L9 (chains H)
MKTILSNQTVDIPENVDISLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW
WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE
KYIRRVRMRPGVACSVSQAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY
VSEKGTVQQADE
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| MG | Magnesium ion | Mg | 97 |
| ZN | Zinc ion | Zn | 5 |
| GDP | Guanosine-5'-diphosphate | C10 H15 N5 O11 P2 | 1 |
Primary citation
Molecular mechanism of cargo recognition and handover by the mammalian signal recognition particle. Jomaa, A., Eitzinger, S., Zhu, Z. et al. Cell Rep (2021) 36:109350-109350. DOI 10.1016/j.celrep.2021.109350 · PubMed
Other PDB entries of the same protein (UniProt A0A5F9D5B2 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 7QWR 2.9 Å, Structure of the ribosome-nascent chain containing an ER signal sequence in complex with…
- 7QWS 3.4 Å, Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC
- 8BTK 3.5 Å, Structure of the TRAP complex with the Sec translocon and a translating ribosome
Browse structure collections
About this viewer
MolViewer shows 7OBR directly in your browser with nothing to install. Switch between cartoon, ball-and-stick, spacefill and surface views, color by chain, secondary structure or B-factor, measure distances, angles and dihedrals, and share or embed the view.