7OF1: 60S ribosomal protein L2-A
Nog1-TAP associated immature ribosomal particle population A from S. cerevisiae. Determined by electron microscopy at 3.1 Å resolution. Released 3 Nov 2021.
- Method
- Electron microscopy
- Resolution
- 3.1 Å
- Organisms
- Saccharomyces cerevisiae (strain ATCC 204508 / S288c), Saccharomyces cerevisiae S288c
- Chains
- 42
- Atoms
- 114,386
- Mol. weight
- 2034.82 kDa
- Ligands
- MG
- Released
- 3 Nov 2021
Explore 7OF1 in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
7OF1 contains 321 α-helices and 285 β-strands across 39 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain a: 5 helices, 7 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 65-68 | 4 | |
| β-strand | 72-74 | 3 | 88 |
| α-helix | 75-78 | 4 | |
| α-helix | 79-81 | 3 | |
| α-helix | 84-92 | 9 | |
| β-strand | 99-100 | 2 | 39 |
| β-strand | 101-103 | 3 | 89 |
| β-strand | 111-113 | 3 | 88 |
| β-strand | 124-127 | 4 | 89 |
| β-strand | 129-130 | 2 | 88 |
| α-helix | 132-141 | 10 | |
| β-strand | 144-147 | 4 | 89 |
Chain A: 9 helices, 15 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 6-10 | 5 | |
| α-helix | 28-32 | 5 | |
| α-helix | 34-38 | 5 | |
| β-strand | 40-49 | 10 | 4 |
| β-strand | 58-64 | 7 | 4 |
| β-strand | 71-77 | 7 | 4 |
| α-helix | 78 | 1 | |
| β-strand | 79 | 1 | 5 |
| β-strand | 83 | 1 | 6 |
| β-strand | 87-91 | 5 | 4 |
| β-strand | 101-103 | 3 | 4 |
| α-helix | 108 | 1 | |
| β-strand | 112-114 | 3 | 4 |
| β-strand | 116 | 1 | 7 |
| β-strand | 126 | 1 | 7 |
| β-strand | 134-140 | 7 | 4 |
| α-helix | 142-144 | 3 | |
| β-strand | 145-149 | 5 | 4 |
| β-strand | 155-159 | 5 | 4 |
| β-strand | 163-166 | 4 | 4 |
| α-helix | 168 | 1 | |
| β-strand | 169 | 1 | 5 |
| α-helix | 174-176 | 3 | |
| α-helix | 182-190 | 9 | |
Chain b: 23 helices, 6 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 14-28 | 15 | |
| α-helix | 39-67 | 29 | |
| α-helix | 69-70 | 2 | |
| α-helix | 76-86 | 11 | |
| α-helix | 88-116 | 29 | |
| α-helix | 122-142 | 21 | |
| α-helix | 144-157 | 14 | |
| β-strand | 170-174 | 5 | 1 |
| α-helix | 180-187 | 8 | |
| β-strand | 205-211 | 7 | 1 |
| β-strand | 214-220 | 7 | 1 |
| α-helix | 234-245 | 12 | |
| β-strand | 249-255 | 7 | 1 |
| α-helix | 264-273 | 10 | |
| α-helix | 275-279 | 5 | |
| β-strand | 283-288 | 6 | 1 |
| α-helix | 295-297 | 3 | |
| α-helix | 300-310 | 11 | |
| β-strand | 317-319 | 3 | 1 |
| α-helix | 328-346 | 19 | |
| α-helix | 380-384 | 5 | |
| α-helix | 386-389 | 4 | |
| α-helix | 400-405 | 6 | |
| α-helix | 425-427 | 3 | |
| α-helix | 430-432 | 3 | |
| α-helix | 441-444 | 4 | |
| α-helix | 449-464 | 16 | |
| α-helix | 483-511 | 29 | |
| α-helix | 517-520 | 4 | |
Chain B: 13 helices, 17 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 9-10 | 2 | |
| β-strand | 42-43 | 2 | 9 |
| β-strand | 45-59 | 15 | 10 |
| β-strand | 71-80 | 10 | 10 |
| β-strand | 84-93 | 10 | 11 |
| β-strand | 100-106 | 7 | 11 |
| α-helix | 112-117 | 6 | |
| α-helix | 131-137 | 7 | |
| α-helix | 143-154 | 12 | |
| β-strand | 157-164 | 8 | 11 |
| α-helix | 166-168 | 3 | |
| β-strand | 178-182 | 5 | 11 |
| β-strand | 183-184 | 2 | 9 |
| α-helix | 188-197 | 10 | |
| β-strand | 199 | 1 | 11 |
| β-strand | 202-203 | 2 | 11 |
| β-strand | 214-220 | 7 | 10 |
| α-helix | 221-222 | 2 | |
| β-strand | 223-227 | 5 | 12 |
| α-helix | 229-233 | 5 | |
| α-helix | 235-238 | 4 | |
| β-strand | 268-271 | 4 | 12 |
| β-strand | 274-286 | 13 | 10 |
| α-helix | 307 | 1 | |
| β-strand | 321-325 | 5 | 10 |
| β-strand | 335-340 | 6 | 10 |
| α-helix | 348-351 | 4 | |
| β-strand | 356-359 | 4 | 10 |
| α-helix | 373-380 | 8 | |
| α-helix | 384-386 | 3 | |
Chain c: 4 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 10-19 | 10 | |
| β-strand | 21-25 | 5 | 2 |
| α-helix | 27-36 | 10 | |
| β-strand | 41-44 | 4 | 2 |
| α-helix | 50-63 | 14 | |
| β-strand | 66-69 | 4 | 2 |
| α-helix | 74-80 | 7 | |
| β-strand | 89-95 | 7 | 2 |
Chain C: 29 helices, 13 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 5-9 | 5 | 14 |
| α-helix | 10 | 1 | |
| α-helix | 14 | 1 | |
| β-strand | 15-21 | 7 | 14 |
| α-helix | 25-27 | 3 | |
| α-helix | 32-42 | 11 | |
| β-strand | 63 | 1 | 15 |
| β-strand | 69 | 1 | 16 |
| β-strand | 71 | 1 | 16 |
| α-helix | 75 | 1 | |
| β-strand | 76 | 1 | 15 |
| α-helix | 77 | 1 | |
| β-strand | 88 | 1 | 15 |
| α-helix | 98-99 | 2 | |
| α-helix | 115-131 | 17 | |
| α-helix | 134-138 | 5 | |
| β-strand | 150-152 | 3 | 14 |
| α-helix | 154-158 | 5 | |
| α-helix | 162-169 | 8 | |
| α-helix | 170-174 | 5 | |
| α-helix | 175-180 | 6 | |
| β-strand | 186-187 | 2 | 17 |
| α-helix | 188-189 | 2 | |
| α-helix | 190-195 | 6 | |
| β-strand | 199-200 | 2 | 17 |
| β-strand | 206-209 | 4 | 14 |
| α-helix | 215-218 | 4 | |
| β-strand | 226-229 | 4 | 14 |
| α-helix | 230-232 | 3 | |
| α-helix | 235-238 | 4 | |
| α-helix | 240-242 | 3 | |
| β-strand | 248-251 | 4 | 14 |
| α-helix | 252-262 | 11 | |
| α-helix | 276-279 | 4 | |
| α-helix | 286-290 | 5 | |
| α-helix | 293-297 | 5 | |
| α-helix | 299-302 | 4 | |
| α-helix | 315-316 | 2 | |
| α-helix | 321-327 | 7 | |
| α-helix | 330-337 | 8 | |
| α-helix | 350-352 | 3 | |
| α-helix | 353-360 | 8 | |
Chain d: 5 helices, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 9-15 | 7 | 3 |
| α-helix | 16-19 | 4 | |
| α-helix | 25-27 | 3 | |
| α-helix | 28-44 | 17 | |
| β-strand | 49-51 | 3 | 3 |
| α-helix | 53-59 | 7 | |
| α-helix | 60-62 | 3 | |
| β-strand | 70-78 | 9 | 3 |
| β-strand | 90-95 | 6 | 3 |
| β-strand | 107-108 | 2 | 3 |
Chain e: 9 helices, 3 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 3-5 | 3 | |
| α-helix | 16-17 | 2 | |
| α-helix | 41-44 | 4 | |
| α-helix | 50-53 | 4 | |
| α-helix | 55-57 | 3 | |
| α-helix | 58-60 | 3 | |
| β-strand | 72-76 | 5 | 8 |
| α-helix | 79-82 | 4 | |
| α-helix | 83-86 | 4 | |
| β-strand | 92-96 | 5 | 8 |
| α-helix | 102-115 | 14 | |
| β-strand | 119 | 1 | 8 |
31 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| 25S rRNA | 1 | RNA | 3396 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | |
| 5.8S rRNA | 2 | RNA | 158 | Saccharomyces cerevisiae S288c | |
| 5S rRNA | 3 | RNA | 121 | Saccharomyces cerevisiae S288c | |
| 60S ribosomal protein L2-A | A | protein | 254 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P0CX45 (AlphaFold model) |
| 60S ribosomal protein L3 | B | protein | 387 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P14126 (AlphaFold model) |
| 60S ribosomal protein L4-A | C | protein | 362 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P10664 (AlphaFold model) |
| 60S ribosomal protein L6-A | E | protein | 176 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Q02326 (AlphaFold model) |
| 60S ribosomal protein L7-A | F | protein | 244 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P05737 |
| 60S ribosomal protein L8-A | G | protein | 256 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P17076 |
| 60S ribosomal protein L9-A | H | protein | 191 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P05738 |
| 60S ribosomal protein L13-A | L | protein | 199 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Q12690 |
| 60S ribosomal protein L14-A | M | protein | 138 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P36105 |
30 more molecules are not listed.
Sequence of entity 1 (1), FASTA
>7OF1_1 25S rRNA (chains 1)
GUUUGACCUCAAAUCAGGUAGGAGUACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGA
AAAGAAACCAACCGGGAUUGCCUUAGUAACGGCGAGUGAAGCGGCAAAAGCUCAAAUUUG
AAAUCUGGUACCUUCGGUGCCCGAGUUGUAAUUUGGAGAGGGCAACUUUGGGGCCGUUCC
UUGUCUAUGUUCCUUGGAACAGGACGUCAUAGAGGGUGAGAAUCCCGUGUGGCGAGGAGU
GCGGUUCUUUGUAAAGUGCCUUCGAAGAGUCGAGUUGUUUGGGAAUGCAGCUCUAAGUGG
GUGGUAAAUUCCAUCUAAAGCUAAAUAUUGGCGAGAGACCGAUAGCGAACAAGUACAGUG
AUGGAAAGAUGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUACGUGAAAUUGUUGAAAGG
GAAGGGCAUUUGAUCAGACAUGGUGUUUUGUGCCCUCUGCUCCUUGUGGGUAGGGGAAUC
UCGCAUUUCACUGGGCCAGCAUCAGUUUUGGUGGCAGGAUAAAUCCAUAGGAAUGUAGCU
UGCCUCGGUAAGUAUUAUAGCCUGUGGGAAUACUGCCAGCUGGGACUGAGGACUGCGACG
UAAGUCAAGGAUGCUGGCAUAAUGGUUAUAUGCCGCCCGUCUUGAAACACGGACCAAGGA
GUCUAACGUCUAUGCGAGUGUUUGGGUGUAAAACCCAUACGCGUAAUGAAAGUGAACGUA
GGUUGGGGCCUCGCAAGAGGUGCACAAUCGACCGAUCCUGAUGUCUUCGGAUGGAUUUGA
GUAAGAGCAUAGCUGUUGGGACCCGAAAGAUGGUGAACUAUGCCUGAAUAGGGUGAAGCC
AGAGGAAACUCUGGUGGAGGCUCGUAGCGGUUCUGACGUGCAAAUCGAUCGUCGAAUUUG
GGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCU
CAGGAUAGCAGAAGCUCGUAUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGAGGUUCCGGG
GUCGAAAUGACCUUGACCUAUUCUCAAACUUUAAAUAUGUAAGAAGUCCUUGUUACUUAA
UUGAACGUGGACAUUUGAAUGAAGAGCUUUUAGUGGGCCAUUUUUGGUAAGCAGAACUGG
CGAUGCGGGAUGAACCGAACGUAGAGUUAAGGUGCCGGAAUACACGCUCAUCAGACACCA
CAAAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAA
GGAGUGUGUAACAACUCACCGGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCUCAAGC
GUGUUACCUAUACUCUACCGUCAGGGUUGAUAUGAUGCCCUGACGAGUAGGCAGGCGUGG
AGGUCAGUGACGAAGCCUAGACCGUAAGGUCGGGUCGAACGGCCUCUAGUGCAGAUCUUG
GUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAAGUGGGGAAAGGUUCCACG
UCAACAGCAGUUGGACGUGGGUUAGUCGAUCCUAAGAGAUGGGGAAGCUCCGUUUCAAAG
GCCUGAUUUUAUGCAGGCCACCAUCGAAAGGGAAUCCGGUUAAGAUUCCGGAACCUGGAU
AUGGAUUCUUCACGGUAACGUAACUGAAUGUGGAGACGUCGGCGCGAGCCCUGGGAGGAG
UUAUCUUUUCUUCUUAACAGCUUAUCACCCCGGAAUUGGUUUAUCCGGAGAUGGGGUCUU
AUGGCUGGAAGAGGCCAGCACCUUUGCUGGCUCCGGUGCGCUUGUGACGGCCCGUGAAAA
UCCACAGGAAGGAAUAGUUUUCAUGCCAGGUCGUACUGAUAACCGCAGCAGGUCUCCAAG
GUGAACAGCCUCUAGUUGAUAGAAUAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGU
AACUUCGGGAUAAGGAUUGGCUCUAAGGGUCGGGUAGUGAGGGCCUUGGUCAGACGCAGC
GGGCGUGCUUGUGGACUGCUUGGUGGGGCUUGCUCUGCUAGGCGGACUACUUGCGUGCCU
UGUUGUAGACGGCCUUGGUAGGUCUCUUGUAGACCGUCGCUUGCUACAAUUAACGAUCAA
CUUAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUG
GUCAGAAAGUGAUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAA
GAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAA
AUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCU
AUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAG
AAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAU
AAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUUCUUUACUUAUUCAA
UGAAGCGGAGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAGGUCCCAUUCGGGGCUGA
UCCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAACGA
UAACGCAGAUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGG
UAAAAGCCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUC
GAUCCUUUAGUCCCUCGGAAUUUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAA
CUGGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAUGUCGGCU
CUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGA
ACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAAUGUUA
CCGCAAUAGUAAUUGAACUUAGUACGAGAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGC
GGCUGUCUGAUCAGGCAUUGCCGCGAAGCUACCAUCCGCUGGAUUAUGGCUGAACGCCUC
UAAGUCAGAAUCCAUGCUAGAACGCGGUGAUUUCUUUGCUCCACACAAUAUAGAUGGAUA
CGAAUAAGGCGUCCUUGUGGCGUCGCUGAACCAUAGCAGGCUAGCAACGGUGCACUUGGC
GGAAAGGCCUUGGGUGCUUGCUGGCGAAUUGCAAUGUCAUUUUGCGUGGGGAUAAAUCAU
UUGUAUACGACUUAGAUGUACAACGGGGUAUUGUAAGCAGUAGAGUAGCCUUGUUGUUAC
GAUCUGCUGAGAUUAAGCCUUUGUUGUCUGAUUUGU
Sequence of entity 2 (2), FASTA
>7OF1_2 5.8S rRNA (chains 2)
AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAU
ACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCC
UUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU
Sequence of entity 3 (3), FASTA
>7OF1_3 5S rRNA (chains 3)
GGUUGCGGCCAUAUCUACCAGAAAGCACCGUUUCCCGUCCGAUCAACUGUAGUUAAGCUG
GUAAGAGCCUGACCGAGUAGUGUAGUGGGUGACCAUACGCGAAACUCAGGUGCUGCAAUC
U
Sequence of entity 4 (A), FASTA
>7OF1_4 60S ribosomal protein L2-A (chains A)
MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAK
VVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKP
GDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLL
KAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLIAA
RRTGLLRGSQKTQD
Sequence of entity 5 (B), FASTA
>7OF1_5 60S ribosomal protein L3 (chains B)
MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDL
DRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK
NWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVHTQIRKTPLAQKKAHLAE
IQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPR
KTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEANGATSFDR
TKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWID
TASKFGKGRFQTPAEKHAFMGTLKKDL
Sequence of entity 6 (C), FASTA
>7OF1_6 60S ribosomal protein L4-A (chains C)
MSRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQT
SAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRY
ATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLK
VLKSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAP
GAHLGRFVIWTEAAFTKLDQVWGSETVASSKVGYTLPSHIISTSDVTRIINSSEIQSAIR
PAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKAEKTGTKPAAVFTETLK
HD
Sequence of entity 7 (E), FASTA
>7OF1_7 60S ribosomal protein L6-A (chains E)
MSAQKAPKWYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLED
NTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEAN
LFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF
Sequence of entity 8 (F), FASTA
>7OF1_8 60S ribosomal protein L7-A (chains F)
MAAEKILTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAER
NIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVT
KATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILS
IDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLV
KSMN
Sequence of entity 9 (G), FASTA
>7OF1_9 60S ribosomal protein L8-A (chains G)
MAPGKKVAPAPFGAKSTKSNKTRNPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQR
QKKILSIRLKVPPTIAQFQYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGK
SKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIV
KGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGN
KAQAKMDKRAKNSDSA
Sequence of entity 10 (H), FASTA
>7OF1_10 60S ribosomal protein L9-A (chains H)
MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNG
GRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGD
KKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIY
VSHKGFITEDL
Sequence of entity 11 (L), FASTA
>7OF1_11 60S ribosomal protein L13-A (chains L)
MAISKNLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPLDLLRPVVRA
PTVKYNRKVRAGRGFTLAEVKAAGLTAAYARTIGIAVDHRRQNRNQEIFDANVQRLKEYQ
SKIIVFPRNGKAPEAEQVLSAAATFPIAQPATDVEARAVQDNGESAFRTLRLARSEKKFR
GIREKRAREKAEAEAEKKK
Sequence of entity 12 (M), FASTA
>7OF1_12 60S ribosomal protein L14-A (chains M)
MSTDSIVKASNWRLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGPKAGVPRQAINL
GQVVLTPLTFALPRGARTATVSKKWAAAAVCEKWAASSWAKKIAQRERRAALTDFERFQV
MVLRKQKRYTVKKALAKA
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| MG | Magnesium ion | Mg | 2 |
Primary citation
Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. Poll, G., Pilsl, M., Griesenbeck, J. et al. PLoS One (2021) 16:e0252497-e0252497. DOI 10.1371/journal.pone.0252497 · PubMed
Other PDB entries of the same protein (UniProt P0CX45 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 9PN5 1.75 Å, Composite map of hypomethylated 80S ribosome treated with hygromycin B
- 8CCS 1.97 Å, 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex
- 8CDR 2.04 Å, Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2…
- 8CEH 2.05 Å, Translocation intermediate 4 (TI-4) of 80S S. cerevisiae ribosome with ligands and eEF2…
- 8P8N 2.15 Å, Mouse RPL39 integrated into the yeast 60S ribosomal subunit
- 8PFR 2.15 Å, Mouse RPL39L integrated into the yeast 60S ribosomal subunit
- 8EVT 2.2 Å, Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome…
- 8T2Y 2.2 Å, Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA,…
- 8P8U 2.23 Å, Yeast 60S ribosomal subunit
- 8CGN 2.28 Å, Non-rotated 80S S. cerevisiae ribosome with ligands
- 8ZHC 2.3 Å, pre-frameshift complex of yeast 80S ribosome with eRF1 and mRNA of WNV
- 7UOO 2.34 Å, Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state
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