7OHV: Ribosome biogenesis protein BRX1
Nog1-TAP associated immature ribosomal particles from S. cerevisiae after rpL2 expression shut down, population C. Determined by electron microscopy at 3.9 Å resolution. Released 3 Nov 2021.
- Method
- Electron microscopy
- Resolution
- 3.9 Å
- Organisms
- Saccharomyces cerevisiae (strain ATCC 204508 / S288c), Saccharomyces cerevisiae S288c, Saccharomyces cerevisiae S288C
- Chains
- 46
- Atoms
- 113,820
- Mol. weight
- 2509.08 kDa
- Ligands
- ZN
- Released
- 3 Nov 2021
Explore 7OHV in 3D
Show helices and sheets
RCSB PDB
PDBe
Secondary structure: helices and β-sheets
7OHV contains 386 α-helices and 381 β-strands across 43 chains. Residue ranges use author residue numbering, as in the PDB file, from PDBe. To see them in 3D, choose the Cartoon representation with Secondary structure coloring: helices, sheets and coils get different colors.
Chain a: 3 helices, 6 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 72-74 | 3 | 2 |
| α-helix | 75-81 | 7 | |
| α-helix | 84-90 | 7 | |
| β-strand | 101-103 | 3 | 3 |
| β-strand | 111-113 | 3 | 2 |
| β-strand | 124-126 | 3 | 3 |
| β-strand | 129-130 | 2 | 2 |
| α-helix | 132-140 | 9 | |
| β-strand | 144-146 | 3 | 3 |
Chain A: 6 helices, 12 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 33-37 | 5 | 6 |
| α-helix | 38 | 1 | |
| α-helix | 43-55 | 13 | |
| β-strand | 60-61 | 2 | 6 |
| α-helix | 74-81 | 8 | |
| β-strand | 85-90 | 6 | 6 |
| β-strand | 97-102 | 6 | 6 |
| β-strand | 109-114 | 6 | 6 |
| β-strand | 118 | 1 | 7 |
| β-strand | 130 | 1 | 8 |
| α-helix | 133 | 1 | |
| β-strand | 134-140 | 7 | 6 |
| α-helix | 141-144 | 4 | |
| α-helix | 147-159 | 13 | |
| β-strand | 173-182 | 10 | 6 |
| β-strand | 185-195 | 11 | 6 |
| β-strand | 210-229 | 20 | 6 |
| β-strand | 232-238 | 7 | 6 |
Chain b: 23 helices, 8 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 9-13 | 5 | |
| α-helix | 14-28 | 15 | |
| α-helix | 39-67 | 29 | |
| α-helix | 71-74 | 4 | |
| α-helix | 76-85 | 10 | |
| α-helix | 88-116 | 29 | |
| α-helix | 122-141 | 20 | |
| α-helix | 144-157 | 14 | |
| β-strand | 169-174 | 6 | 4 |
| α-helix | 180-187 | 8 | |
| β-strand | 205-211 | 7 | 4 |
| β-strand | 214-220 | 7 | 4 |
| α-helix | 234-245 | 12 | |
| β-strand | 248-254 | 7 | 4 |
| α-helix | 259-261 | 3 | |
| α-helix | 264-274 | 11 | |
| α-helix | 275-277 | 3 | |
| β-strand | 283-287 | 5 | 4 |
| α-helix | 303-306 | 4 | |
| α-helix | 307-311 | 5 | |
| β-strand | 315-319 | 5 | 4 |
| α-helix | 322-327 | 6 | |
| α-helix | 328-341 | 14 | |
| α-helix | 386-388 | 3 | |
| α-helix | 399-406 | 8 | |
| α-helix | 408-411 | 4 | |
| α-helix | 426-428 | 3 | |
| β-strand | 435-436 | 2 | 5 |
| β-strand | 439-440 | 2 | 5 |
| α-helix | 441-443 | 3 | |
| α-helix | 449-464 | 16 | |
Chain B: 15 helices, 18 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 14-16 | 3 | |
| α-helix | 20-22 | 3 | |
| β-strand | 36 | 1 | 10 |
| α-helix | 40-41 | 2 | |
| β-strand | 43 | 1 | 11 |
| β-strand | 45-60 | 16 | 12 |
| β-strand | 70-80 | 11 | 12 |
| α-helix | 82-83 | 2 | |
| β-strand | 84-93 | 10 | 13 |
| β-strand | 100-106 | 7 | 13 |
| α-helix | 112-117 | 6 | |
| α-helix | 131-137 | 7 | |
| α-helix | 142-154 | 13 | |
| β-strand | 157-164 | 8 | 13 |
| α-helix | 166-168 | 3 | |
| β-strand | 178-182 | 5 | 13 |
| β-strand | 183 | 1 | 11 |
| β-strand | 185 | 1 | 10 |
| α-helix | 189-198 | 10 | |
| β-strand | 202-203 | 2 | 13 |
| α-helix | 205-207 | 3 | |
| β-strand | 214-220 | 7 | 12 |
| α-helix | 221-222 | 2 | |
| β-strand | 223-227 | 5 | 14 |
| β-strand | 268-271 | 4 | 14 |
| β-strand | 274-285 | 12 | 12 |
| α-helix | 307 | 1 | |
| β-strand | 321-325 | 5 | 12 |
| β-strand | 335-339 | 5 | 12 |
| α-helix | 348-351 | 4 | |
| α-helix | 352-354 | 3 | |
| β-strand | 356-359 | 4 | 12 |
| α-helix | 373-380 | 8 | |
Chain C: 27 helices, 11 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 5-9 | 5 | 16 |
| α-helix | 14 | 1 | |
| β-strand | 15-21 | 7 | 16 |
| α-helix | 25-27 | 3 | |
| α-helix | 29-30 | 2 | |
| α-helix | 32-42 | 11 | |
| β-strand | 62-63 | 2 | 17 |
| β-strand | 76-77 | 2 | 17 |
| β-strand | 88 | 1 | 17 |
| α-helix | 98-99 | 2 | |
| α-helix | 115-129 | 15 | |
| α-helix | 134-138 | 5 | |
| β-strand | 150-152 | 3 | 16 |
| α-helix | 154-158 | 5 | |
| α-helix | 162-169 | 8 | |
| α-helix | 170-174 | 5 | |
| α-helix | 175-180 | 6 | |
| β-strand | 186-187 | 2 | 18 |
| α-helix | 188-189 | 2 | |
| α-helix | 191-195 | 5 | |
| β-strand | 199-200 | 2 | 18 |
| β-strand | 206-209 | 4 | 16 |
| α-helix | 215-219 | 5 | |
| β-strand | 226-229 | 4 | 16 |
| α-helix | 235-238 | 4 | |
| α-helix | 240-242 | 3 | |
| β-strand | 248-251 | 4 | 16 |
| α-helix | 252-262 | 11 | |
| α-helix | 276-279 | 4 | |
| α-helix | 286-290 | 5 | |
| α-helix | 293-296 | 4 | |
| α-helix | 300-302 | 3 | |
| α-helix | 321-326 | 6 | |
| α-helix | 330-336 | 7 | |
| α-helix | 339-341 | 3 | |
| α-helix | 345-347 | 3 | |
| α-helix | 350-352 | 3 | |
| α-helix | 353-359 | 7 | |
Chain d: 3 helices, 5 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 8-15 | 8 | 9 |
| α-helix | 16-20 | 5 | |
| α-helix | 25-44 | 20 | |
| β-strand | 49-51 | 3 | 9 |
| α-helix | 53-61 | 9 | |
| β-strand | 70-79 | 10 | 9 |
| β-strand | 89-95 | 7 | 9 |
| β-strand | 107-109 | 3 | 9 |
Chain D: 27 helices, 18 β-strands
| Element | Residues | Length | Sheet |
|---|
| β-strand | 43 | 1 | 20 |
| α-helix | 44-46 | 3 | |
| α-helix | 51-60 | 10 | |
| β-strand | 64 | 1 | 20 |
| α-helix | 67-78 | 12 | |
| β-strand | 82-83 | 2 | 21 |
| α-helix | 86-87 | 2 | |
| α-helix | 92-107 | 16 | |
| α-helix | 111-113 | 3 | |
| β-strand | 117-120 | 4 | 22 |
| α-helix | 124-138 | 15 | |
| β-strand | 146-147 | 2 | 22 |
| α-helix | 154-164 | 11 | |
| β-strand | 167-170 | 4 | 22 |
| α-helix | 172-181 | 10 | |
| β-strand | 192-195 | 4 | 22 |
| β-strand | 196 | 1 | 23 |
| α-helix | 198-204 | 7 | |
| α-helix | 207-216 | 10 | |
| β-strand | 223-224 | 2 | 22 |
| β-strand | 227 | 1 | 23 |
| α-helix | 233-242 | 10 | |
| β-strand | 248-249 | 2 | 21 |
| β-strand | 266-270 | 5 | 24 |
| α-helix | 276-286 | 11 | |
| β-strand | 292-296 | 5 | 24 |
| α-helix | 299-311 | 13 | |
| β-strand | 317-319 | 3 | 24 |
| α-helix | 325-338 | 14 | |
| β-strand | 342-346 | 5 | 24 |
| α-helix | 347-351 | 5 | |
| β-strand | 360-363 | 4 | 24 |
| α-helix | 366-367 | 2 | |
| α-helix | 370-383 | 14 | |
| β-strand | 389-394 | 6 | 24 |
| α-helix | 396-398 | 3 | |
| α-helix | 401-407 | 7 | |
| α-helix | 410-411 | 2 | |
| β-strand | 412-414 | 3 | 24 |
| α-helix | 419-421 | 3 | |
| α-helix | 426-435 | 10 | |
| α-helix | 437-455 | 19 | |
| α-helix | 465-467 | 3 | |
| α-helix | 470-477 | 8 | |
| α-helix | 482-484 | 3 | |
Chain e: 8 helices, 4 β-strands
| Element | Residues | Length | Sheet |
|---|
| α-helix | 7-9 | 3 | |
| α-helix | 16-17 | 2 | |
| α-helix | 55-57 | 3 | |
| α-helix | 58-60 | 3 | |
| α-helix | 61-63 | 3 | |
| β-strand | 66 | 1 | 15 |
| β-strand | 72-76 | 5 | 15 |
| α-helix | 79-82 | 4 | |
| α-helix | 83-85 | 3 | |
| β-strand | 92-96 | 5 | 15 |
| α-helix | 102-115 | 14 | |
| β-strand | 119 | 1 | 15 |
35 more chain groups are not listed. Open the entry in the viewer and use the sequence panel to see them.
Molecules and chains
| Molecule | Chains | Type | Length | Organism | UniProt |
|---|
| 25S rRNA | 1 | RNA | 3396 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | |
| 5.8S rRNA | 2 | RNA | 158 | Saccharomyces cerevisiae S288c | |
| ITS2 | 6 | RNA | 232 | Saccharomyces cerevisiae S288C | |
| Ribosome biogenesis protein BRX1 | A | protein | 291 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Q08235 (AlphaFold model) |
| 60S ribosomal protein L3 | B | protein | 387 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P14126 (AlphaFold model) |
| 60S ribosomal protein L4-A | C | protein | 362 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P10664 (AlphaFold model) |
| ATP-dependent RNA helicase HAS1 | D | protein | 505 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Q03532 (AlphaFold model) |
| 60S ribosomal protein L6-A | E | protein | 176 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | Q02326 |
| 60S ribosomal protein L7-A | F | protein | 244 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P05737 |
| 60S ribosomal protein L8-A | G | protein | 256 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P17076 |
| 60S ribosomal protein L9-A | H | protein | 191 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P05738 |
| rRNA-processing protein EBP2 | J | protein | 427 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | P36049 |
34 more molecules are not listed.
Sequence of entity 1 (1), FASTA
>7OHV_1 25S rRNA (chains 1)
GUUUGACCUCAAAUCAGGUAGGAGUACCCGCUGAACUUAAGCAUAUCAAUAAGCGGAGGA
AAAGAAACCAACCGGGAUUGCCUUAGUAACGGCGAGUGAAGCGGCAAAAGCUCAAAUUUG
AAAUCUGGUACCUUCGGUGCCCGAGUUGUAAUUUGGAGAGGGCAACUUUGGGGCCGUUCC
UUGUCUAUGUUCCUUGGAACAGGACGUCAUAGAGGGUGAGAAUCCCGUGUGGCGAGGAGU
GCGGUUCUUUGUAAAGUGCCUUCGAAGAGUCGAGUUGUUUGGGAAUGCAGCUCUAAGUGG
GUGGUAAAUUCCAUCUAAAGCUAAAUAUUGGCGAGAGACCGAUAGCGAACAAGUACAGUG
AUGGAAAGAUGAAAAGAACUUUGAAAAGAGAGUGAAAAAGUACGUGAAAUUGUUGAAAGG
GAAGGGCAUUUGAUCAGACAUGGUGUUUUGUGCCCUCUGCUCCUUGUGGGUAGGGGAAUC
UCGCAUUUCACUGGGCCAGCAUCAGUUUUGGUGGCAGGAUAAAUCCAUAGGAAUGUAGCU
UGCCUCGGUAAGUAUUAUAGCCUGUGGGAAUACUGCCAGCUGGGACUGAGGACUGCGACG
UAAGUCAAGGAUGCUGGCAUAAUGGUUAUAUGCCGCCCGUCUUGAAACACGGACCAAGGA
GUCUAACGUCUAUGCGAGUGUUUGGGUGUAAAACCCAUACGCGUAAUGAAAGUGAACGUA
GGUUGGGGCCUCGCAAGAGGUGCACAAUCGACCGAUCCUGAUGUCUUCGGAUGGAUUUGA
GUAAGAGCAUAGCUGUUGGGACCCGAAAGAUGGUGAACUAUGCCUGAAUAGGGUGAAGCC
AGAGGAAACUCUGGUGGAGGCUCGUAGCGGUUCUGACGUGCAAAUCGAUCGUCGAAUUUG
GGUAUAGGGGCGAAAGACUAAUCGAACCAUCUAGUAGCUGGUUCCUGCCGAAGUUUCCCU
CAGGAUAGCAGAAGCUCGUAUCAGUUUUAUGAGGUAAAGCGAAUGAUUAGAGGUUCCGGG
GUCGAAAUGACCUUGACCUAUUCUCAAACUUUAAAUAUGUAAGAAGUCCUUGUUACUUAA
UUGAACGUGGACAUUUGAAUGAAGAGCUUUUAGUGGGCCAUUUUUGGUAAGCAGAACUGG
CGAUGCGGGAUGAACCGAACGUAGAGUUAAGGUGCCGGAAUACACGCUCAUCAGACACCA
CAAAAGGUGUUAGUUCAUCUAGACAGCCGGACGGUGGCCAUGGAAGUCGGAAUCCGCUAA
GGAGUGUGUAACAACUCACCGGCCGAAUGAACUAGCCCUGAAAAUGGAUGGCGCUCAAGC
GUGUUACCUAUACUCUACCGUCAGGGUUGAUAUGAUGCCCUGACGAGUAGGCAGGCGUGG
AGGUCAGUGACGAAGCCUAGACCGUAAGGUCGGGUCGAACGGCCUCUAGUGCAGAUCUUG
GUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGACUGAAGUGGGGAAAGGUUCCACG
UCAACAGCAGUUGGACGUGGGUUAGUCGAUCCUAAGAGAUGGGGAAGCUCCGUUUCAAAG
GCCUGAUUUUAUGCAGGCCACCAUCGAAAGGGAAUCCGGUUAAGAUUCCGGAACCUGGAU
AUGGAUUCUUCACGGUAACGUAACUGAAUGUGGAGACGUCGGCGCGAGCCCUGGGAGGAG
UUAUCUUUUCUUCUUAACAGCUUAUCACCCCGGAAUUGGUUUAUCCGGAGAUGGGGUCUU
AUGGCUGGAAGAGGCCAGCACCUUUGCUGGCUCCGGUGCGCUUGUGACGGCCCGUGAAAA
UCCACAGGAAGGAAUAGUUUUCAUGCCAGGUCGUACUGAUAACCGCAGCAGGUCUCCAAG
GUGAACAGCCUCUAGUUGAUAGAAUAAUGUAGAUAAGGGAAGUCGGCAAAAUAGAUCCGU
AACUUCGGGAUAAGGAUUGGCUCUAAGGGUCGGGUAGUGAGGGCCUUGGUCAGACGCAGC
GGGCGUGCUUGUGGACUGCUUGGUGGGGCUUGCUCUGCUAGGCGGACUACUUGCGUGCCU
UGUUGUAGACGGCCUUGGUAGGUCUCUUGUAGACCGUCGCUUGCUACAAUUAACGAUCAA
CUUAGAACUGGUACGGACAAGGGGAAUCUGACUGUCUAAUUAAAACAUAGCAUUGCGAUG
GUCAGAAAGUGAUGUUGACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAA
GAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAA
AUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCU
AUCUACUAUCUAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAG
AAGACCCUGUUGAGCUUGACUCUAGUUUGACAUUGUGAAGAGACAUAGAGGGUGUAGAAU
AAGUGGGAGCUUCGGCGCCAGUGAAAUACCACUACCUUUAUAGUUUCUUUACUUAUUCAA
UGAAGCGGAGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAGGUCCCAUUCGGGGCUGA
UCCGGGUUGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAACGA
UAACGCAGAUGUCCUAAGGGGGGCUCAUGGAGAACAGAAAUCUCCAGUAGAACAAAAGGG
UAAAAGCCCCCUUGAUUUUGAUUUUCAGUGUGAAUACAAACCAUGAAAGUGUGGCCUAUC
GAUCCUUUAGUCCCUCGGAAUUUGAGGCUAGAGGUGCCAGAAAAGUUACCACAGGGAUAA
CUGGCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAUGUCGGCU
CUUCCUAUCAUACCGAAGCAGAAUUCGGUAAGCGUUGGAUUGUUCACCCACUAAUAGGGA
ACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGAAUGUUA
CCGCAAUAGUAAUUGAACUUAGUACGAGAGGAACAGUUCAUUCGGAUAAUUGGUUUUUGC
GGCUGUCUGAUCAGGCAUUGCCGCGAAGCUACCAUCCGCUGGAUUAUGGCUGAACGCCUC
UAAGUCAGAAUCCAUGCUAGAACGCGGUGAUUUCUUUGCUCCACACAAUAUAGAUGGAUA
CGAAUAAGGCGUCCUUGUGGCGUCGCUGAACCAUAGCAGGCUAGCAACGGUGCACUUGGC
GGAAAGGCCUUGGGUGCUUGCUGGCGAAUUGCAAUGUCAUUUUGCGUGGGGAUAAAUCAU
UUGUAUACGACUUAGAUGUACAACGGGGUAUUGUAAGCAGUAGAGUAGCCUUGUUGUUAC
GAUCUGCUGAGAUUAAGCCUUUGUUGUCUGAUUUGU
Sequence of entity 2 (2), FASTA
>7OHV_2 5.8S rRNA (chains 2)
AAACUUUCAACAACGGAUCUCUUGGUUCUCGCAUCGAUGAAGAACGCAGCGAAAUGCGAU
ACGUAAUGUGAAUUGCAGAAUUCCGUGAAUCAUCGAAUCUUUGAACGCACAUUGCGCCCC
UUGGUAUUCCAGGGGGCAUGCCUGUUUGAGCGUCAUUU
Sequence of entity 3 (6), FASTA
>7OHV_3 ITS2 (chains 6)
CCUUCUCAAACAUUCUGUUUGGUAGUGAGUGAUACUCUUUGGAGUUAACUUGAAAUUGCU
GGCCUUUUCAUUGGAUGUUUUUUUUCCAAAGAGAGGUUUCUCUGCGUGCUUGAGGUAUAA
UGCAAGUACGGUCGUUUUAGGUUUUACCAACUGCGGCUAAUCUUUUUUUAUACUGAGCGU
AUUGGAACGUUAUCGAUAAGAAGAGAGCGUCUAGGCGAACAAUGUUCUUAAA
Sequence of entity 4 (A), FASTA
>7OHV_4 Ribosome biogenesis protein BRX1 (chains A)
MSSIYKALAGKSKDNKSEKKQGNVKQFMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSR
KEPKLDTKKDLQQLNEIAELYNCNNVLFFEARKHQDLYLWLSKPPNGPTIKFYIQNLHTM
DELNFTGNCLKGSRPVLSFDQRFESSPHYQLIKELLVHNFGVPPNARKSKPFIDHVMSFS
IVDDKIWVRTYEISHSTKNKEEYEDGEEDISLVEIGPRFVMTVILILEGSFGGPKIYENK
QYVSPNVVRAQIKQQAAEEAKSRAEAAVERKIKRRENVLAADPLSNDALFK
Sequence of entity 5 (B), FASTA
>7OHV_5 60S ribosomal protein L3 (chains B)
MSHRKYEAPRHGHLGFLPRKRAASIRARVKAFPKDDRSKPVALTSFLGYKAGMTTIVRDL
DRPGSKFHKREVVEAVTVVDTPPVVVVGVVGYVETPRGLRSLTTVWAEHLSDEVKRRFYK
NWYKSKKKAFTKYSAKYAQDGAGIERELARIKKYASVVRVLVHTQIRKTPLAQKKAHLAE
IQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTHRWGTKKLPR
KTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEANGATSFDR
TKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWID
TASKFGKGRFQTPAEKHAFMGTLKKDL
Sequence of entity 6 (C), FASTA
>7OHV_6 60S ribosomal protein L4-A (chains C)
MSRPQVTVHSLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNKNKRQAYAVSEKAGHQT
SAESWGTGRAVARIPRVGGGGTGRSGQGAFGNMCRGGRMFAPTKTWRKWNVKVNHNEKRY
ATASAIAATAVASLVLARGHRVEKIPEIPLVVSTDLESIQKTKEAVAALKAVGAHSDLLK
VLKSKKLRAGKGKYRNRRWTQRRGPLVVYAEDNGIVKALRNVPGVETANVASLNLLQLAP
GAHLGRFVIWTEAAFTKLDQVWGSETVASSKVGYTLPSHIISTSDVTRIINSSEIQSAIR
PAGQATQKRTHVLKKNPLKNKQVLLRLNPYAKVFAAEKLGSKKAEKTGTKPAAVFTETLK
HD
Sequence of entity 7 (D), FASTA
>7OHV_7 ATP-dependent RNA helicase HAS1 (chains D)
MATPSNKRSRDSESTEEPVVDEKSTSKQNNAAPEGEQTTCVEKFEELKLSQPTLKAIEKM
GFTTMTSVQARTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIELLHSLKFKPRNGTGIIVI
TPTRELALQIFGVARELMEFHSQTFGIVIGGANRRQEAEKLMKGVNMLIATPGRLLDHLQ
NTKGFVFKNLKALIIDEADRILEIGFEDEMRQIIKILPNEDRQSMLFSATQTTKVEDLAR
ISLRPGPLFINVVPETDNSTADGLEQGYVVCDSDKRFLLLFSFLKRNQKKKIIVFLSSCN
SVKYYAELLNYIDLPVLELHGKQKQQKRTNTFFEFCNAERGILICTDVAARGLDIPAVDW
IIQFDPPDDPRDYIHRVGRTARGTKGKGKSLMFLTPNELGFLRYLKASKVPLNEYEFPEN
KIANVQSQLEKLIKSNYYLHQTAKDGYRSYLQAYASHSLKTVYQIDKLDLAKVAKSYGFP
VPPKVNITIGASGKTPNTKRRKTHK
Sequence of entity 8 (E), FASTA
>7OHV_8 60S ribosomal protein L6-A (chains E)
MSAQKAPKWYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLED
NTLLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEAN
LFPEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF
Sequence of entity 9 (F), FASTA
>7OHV_9 60S ribosomal protein L7-A (chains F)
MAAEKILTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAER
NIIQAKRDAKAAGSYYVEAQHKLVFVVRIKGINKIPPKPRKVLQLLRLTRINSGTFVKVT
KATLELLKLIEPYVAYGYPSYSTIRQLVYKRGFGKINKQRVPLSDNAIIEANLGKYGILS
IDDLIHEIITVGPHFKQANNFLWPFKLSNPSGGWGVPRKFKHFIQGGSFGNREEFINKLV
KSMN
Sequence of entity 10 (G), FASTA
>7OHV_10 60S ribosomal protein L8-A (chains G)
MAPGKKVAPAPFGAKSTKSNKTRNPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQR
QKKILSIRLKVPPTIAQFQYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEGK
SKQDASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIV
KGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFADKYDEVKKHWGGGILGN
KAQAKMDKRAKNSDSA
Sequence of entity 11 (H), FASTA
>7OHV_11 60S ribosomal protein L9-A (chains H)
MKYIQTEQQIEVPEGVTVSIKSRIVKVVGPRGTLTKNLKHIDVTFTKVNNQLIKVAVHNG
GRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGD
KKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIY
VSHKGFITEDL
Sequence of entity 12 (J), FASTA
>7OHV_12 rRNA-processing protein EBP2 (chains J)
MAKGFKLKELLSHQKEIEKAEKLENDLKKKKSQELKKEEPTIVTASNLKKLEKKEKKADV
KKEVAADTEEYQSQALSKKEKRKLKKELKKMQEQDATEAQKHMSGDEDESGDDREEEEEE
EEEEEGRLDLEKLAKSDSESEDDSESENDSEEDEDVVAKEESEEKEEQEEEQDVPLSDVE
FDSDADVVPHHKLTVNNTKAMKHALERVQLPWKKHSFQEHQSVTSETNTDEHIKDIYDDT
ERELAFYKQSLDAVLVARDELKRLKVPFKRPLDYFAEMVKSDEHMDKIKGKLIEEASDKK
AREEARRQRQLKKFGKQVQNATLQKRQLEKRETLEKIKSLKNKRKHNEIDHSEFNVGVEE
EVEGKRFDRGRPNGKRAAKNAKYGQGGMKRFKRKNDATSSADVSGFSSRKMKGKTNRPGK
SRRARRF
Ligands and cofactors
| ID | Name | Formula | Copies |
|---|
| ZN | Zinc ion | Zn | 1 |
Primary citation
Analysis of subunit folding contribution of three yeast large ribosomal subunit proteins required for stabilisation and processing of intermediate nuclear rRNA precursors. Poll, G., Pilsl, M., Griesenbeck, J. et al. PLoS One (2021) 16:e0252497-e0252497. DOI 10.1371/journal.pone.0252497 · PubMed
Other PDB entries of the same protein (UniProt Q08235 (AlphaFold model), which also has an AlphaFold model), best resolution first:
- 5Z1G 2.29 Å, Structure of the Brx1 and Ebp2 complex
- 8V83 2.53 Å, 60S ribosome biogenesis intermediate (Dbp10 pre-catalytic structure - Overall map)
- 8V87 2.66 Å, 60S ribosome biogenesis intermediate (Dbp10 post-catalytic structure - Overall map)
- 8V84 2.7 Å, 60S ribosome biogenesis intermediate (Dbp10 catalytic structure - Overall map)
- 10ZY 2.74 Å, Yeast co-transcriptional pre-60S assembly intermediate Pwp1 RNP
- 11AA 2.78 Å, Yeast co-transcriptional pre-60S assembly intermediate Nop12 RNP
- 10ZZ 2.8 Å, Yeast co-transcriptional pre-60S assembly intermediate Pwp1 RNP*
- 7NAC 3.04 Å, State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model
- 7R7A 3.04 Å, State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model
- 7R6K 3.17 Å, State E2 nucleolar 60S ribosomal intermediate - Model for Noc2/Noc3 region
- 6EM3 3.2 Å, State A architectural model (Nsa1-TAP Flag-Ytm1) - Visualizing the assembly pathway of…
- 6ELZ 3.3 Å, State E (TAP-Flag-Ytm1 E80A) - Visualizing the assembly pathway of nucleolar pre-60S…
Browse structure collections
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